Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mboo_0287 |
Symbol | |
ID | 5410309 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Candidatus Methanoregula boonei 6A8 |
Kingdom | Archaea |
Replicon accession | NC_009712 |
Strand | - |
Start bp | 272885 |
End bp | 274783 |
Gene Length | 1899 bp |
Protein Length | 632 aa |
Translation table | 11 |
GC content | 33% |
IMG OID | 640867503 |
Product | putative transcriptional regulator |
Protein accession | YP_001403452 |
Protein GI | 154149834 |
COG category | [K] Transcription |
COG ID | [COG2865] Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.00361715 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 54 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATATTG ACGATATTCT CGCAGCCTTC CAAATATTCG ATCATGTTTC AGATATTGAC AAATTTCAAA GTTGGATAAG AACTTATCAC AAAATCGAGG ATTTTGAGCC TCTATTTTTA GGTTATCGCT ATTTTTTGGA AATTTGCGGA ATTAGAATAG TCGATGAGAT ATCTGAAGAT TTTTCTCTTA ATTTAGAAAT GGACGATTAT TTCTCGTTCG CTTGTAATGC CGATTTGCCT TTAGATGAAA TCCCAAACTC CTGTGAAAAA GTTATTGTTA TAAAAAATAT ATGGCGATAT TTTGAACCAA TTAAAAATGC CAAGGATTGG GCGGAATTAA AAACGATCAT CCATCAAACC GAGGAAATCT CAAAAATTTT TAGAGAGATT TTTAAAAACG CAAATGTGAC TGAAAATTTT CCCGAAAAAG AGATCTCGCG TTTTGCCGCA CTACATTATA CACACATATT TTTTAATGAT ACATCACGGT TGAAACCCGC TGGAGCTGTT GTTGGATTAA TTAAATTAGA TATTGATTCC ATAGGATCTG ACTTTTTTAA AGGATATGCA TATACATTAG AATATCTTTG GTATCAATTA CTTGAAAAAA ATGAATTTCA GCATAGTTTA GCAAAAAATA TTCACAATCC TGCAACGGGA TTAAGTTCTG AAGATCTTCA AAGAATAACT GAAATTTATT CACACAACGA TTATGAAGAC CCTGCATTTC AGGAAAATGC TGTTATGTGG GCCACATTGG ATCAATTATT CCAACCGCTT TTTGAAAAAT GCCTAGCTCC AAAATTTAGA GAATATCATA CCTCTTCAAG ATCACATTTT ATCGTTAGAG ATAATATTAG TAAGTCTTTA ATTTTTCCTT TATTAGATCG AACCTATATC AATGAGCCTT ATTATTTTTC TGATAATTCC AACGATGAAG CACGATTTAA AAAAATTGAT TATCATTTTA AATGGTTGCC CGTGACATAC ATTGACTCTG GCAAGGTGCA TGATGCTTTT GGAACATACG CTTTTATTCC ATTTTTATTA GGATTAACTT CGAGTGAAAA TGTATCATCT AATAATAAAA TTGAAATCCT GCGAATAAAG CATCCTGAGG ACGGAGTTTC AGGTTATTTC TATAGTTATG GGATCTTGAA TAAATCACAA TATTTTGATG AGCAAGGGAT GGGTTGGATT ATTTTCCTCA CATGTGGAAC AGATTTTTCA GGGCATGGTG GATCTATGCA CACCAGTGCA GAAAAGTGTA TTCGAGAAAT CCAGAAAAGA GGAATTCTTG ATGCAAAAGA AATCACGATT GATGAGAACG CTTTCAGGAG GTATTTAAAA GAACGAACTG AAACCTCGGT TTCTGATAGT ACTACTCCTG TAGAGACATT AATTGAATTT GGGGAATCAC AATTGGTTGA ATTTAAATCA TCTCTTTTGT GGAGTTATGA AAAAAATCAG ATTAGCAATT CTACAGAATA TGAAGTAGTA AGGACAATAG CTGCTTTTTT AAATTCATCA GGTGGAACCC TGTTAATTGG TGTAGATAAA AATAAAAATA TCGTGGGATT AGATAAAGAC TATGCCCAAT TGAAACAAGC GCGCCGTGTT CAAAACAGAG ATGGTTTTGA AATTCGTTTA AACGAGGTTC TGAATAAATT TTTTGGGCGG GGGATCAGAT TAGATATTGA TGTGATTTTT GAAAGATTAA GTGAGAAAGA GATTTGTCGT GTAATTGTAA AACCCACAAT TGAACCCATA TTCTTAGTTA ATTCAAATAA TTCTAATCAT AGTGAATTTA TTGTCAGATC CGGGAATCAA TCTCAATTAT TGATGGGTAA AGAAATCACT AGTTATATCA CAAAACACTG GAACTATAAA AAACGATAA
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Protein sequence | MDIDDILAAF QIFDHVSDID KFQSWIRTYH KIEDFEPLFL GYRYFLEICG IRIVDEISED FSLNLEMDDY FSFACNADLP LDEIPNSCEK VIVIKNIWRY FEPIKNAKDW AELKTIIHQT EEISKIFREI FKNANVTENF PEKEISRFAA LHYTHIFFND TSRLKPAGAV VGLIKLDIDS IGSDFFKGYA YTLEYLWYQL LEKNEFQHSL AKNIHNPATG LSSEDLQRIT EIYSHNDYED PAFQENAVMW ATLDQLFQPL FEKCLAPKFR EYHTSSRSHF IVRDNISKSL IFPLLDRTYI NEPYYFSDNS NDEARFKKID YHFKWLPVTY IDSGKVHDAF GTYAFIPFLL GLTSSENVSS NNKIEILRIK HPEDGVSGYF YSYGILNKSQ YFDEQGMGWI IFLTCGTDFS GHGGSMHTSA EKCIREIQKR GILDAKEITI DENAFRRYLK ERTETSVSDS TTPVETLIEF GESQLVEFKS SLLWSYEKNQ ISNSTEYEVV RTIAAFLNSS GGTLLIGVDK NKNIVGLDKD YAQLKQARRV QNRDGFEIRL NEVLNKFFGR GIRLDIDVIF ERLSEKEICR VIVKPTIEPI FLVNSNNSNH SEFIVRSGNQ SQLLMGKEIT SYITKHWNYK KR
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