Gene Mboo_0287 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMboo_0287 
Symbol 
ID5410309 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCandidatus Methanoregula boonei 6A8 
KingdomArchaea 
Replicon accessionNC_009712 
Strand
Start bp272885 
End bp274783 
Gene Length1899 bp 
Protein Length632 aa 
Translation table11 
GC content33% 
IMG OID640867503 
Productputative transcriptional regulator 
Protein accessionYP_001403452 
Protein GI154149834 
COG category[K] Transcription 
COG ID[COG2865] Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00361715 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones54 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATATTG ACGATATTCT CGCAGCCTTC CAAATATTCG ATCATGTTTC AGATATTGAC 
AAATTTCAAA GTTGGATAAG AACTTATCAC AAAATCGAGG ATTTTGAGCC TCTATTTTTA
GGTTATCGCT ATTTTTTGGA AATTTGCGGA ATTAGAATAG TCGATGAGAT ATCTGAAGAT
TTTTCTCTTA ATTTAGAAAT GGACGATTAT TTCTCGTTCG CTTGTAATGC CGATTTGCCT
TTAGATGAAA TCCCAAACTC CTGTGAAAAA GTTATTGTTA TAAAAAATAT ATGGCGATAT
TTTGAACCAA TTAAAAATGC CAAGGATTGG GCGGAATTAA AAACGATCAT CCATCAAACC
GAGGAAATCT CAAAAATTTT TAGAGAGATT TTTAAAAACG CAAATGTGAC TGAAAATTTT
CCCGAAAAAG AGATCTCGCG TTTTGCCGCA CTACATTATA CACACATATT TTTTAATGAT
ACATCACGGT TGAAACCCGC TGGAGCTGTT GTTGGATTAA TTAAATTAGA TATTGATTCC
ATAGGATCTG ACTTTTTTAA AGGATATGCA TATACATTAG AATATCTTTG GTATCAATTA
CTTGAAAAAA ATGAATTTCA GCATAGTTTA GCAAAAAATA TTCACAATCC TGCAACGGGA
TTAAGTTCTG AAGATCTTCA AAGAATAACT GAAATTTATT CACACAACGA TTATGAAGAC
CCTGCATTTC AGGAAAATGC TGTTATGTGG GCCACATTGG ATCAATTATT CCAACCGCTT
TTTGAAAAAT GCCTAGCTCC AAAATTTAGA GAATATCATA CCTCTTCAAG ATCACATTTT
ATCGTTAGAG ATAATATTAG TAAGTCTTTA ATTTTTCCTT TATTAGATCG AACCTATATC
AATGAGCCTT ATTATTTTTC TGATAATTCC AACGATGAAG CACGATTTAA AAAAATTGAT
TATCATTTTA AATGGTTGCC CGTGACATAC ATTGACTCTG GCAAGGTGCA TGATGCTTTT
GGAACATACG CTTTTATTCC ATTTTTATTA GGATTAACTT CGAGTGAAAA TGTATCATCT
AATAATAAAA TTGAAATCCT GCGAATAAAG CATCCTGAGG ACGGAGTTTC AGGTTATTTC
TATAGTTATG GGATCTTGAA TAAATCACAA TATTTTGATG AGCAAGGGAT GGGTTGGATT
ATTTTCCTCA CATGTGGAAC AGATTTTTCA GGGCATGGTG GATCTATGCA CACCAGTGCA
GAAAAGTGTA TTCGAGAAAT CCAGAAAAGA GGAATTCTTG ATGCAAAAGA AATCACGATT
GATGAGAACG CTTTCAGGAG GTATTTAAAA GAACGAACTG AAACCTCGGT TTCTGATAGT
ACTACTCCTG TAGAGACATT AATTGAATTT GGGGAATCAC AATTGGTTGA ATTTAAATCA
TCTCTTTTGT GGAGTTATGA AAAAAATCAG ATTAGCAATT CTACAGAATA TGAAGTAGTA
AGGACAATAG CTGCTTTTTT AAATTCATCA GGTGGAACCC TGTTAATTGG TGTAGATAAA
AATAAAAATA TCGTGGGATT AGATAAAGAC TATGCCCAAT TGAAACAAGC GCGCCGTGTT
CAAAACAGAG ATGGTTTTGA AATTCGTTTA AACGAGGTTC TGAATAAATT TTTTGGGCGG
GGGATCAGAT TAGATATTGA TGTGATTTTT GAAAGATTAA GTGAGAAAGA GATTTGTCGT
GTAATTGTAA AACCCACAAT TGAACCCATA TTCTTAGTTA ATTCAAATAA TTCTAATCAT
AGTGAATTTA TTGTCAGATC CGGGAATCAA TCTCAATTAT TGATGGGTAA AGAAATCACT
AGTTATATCA CAAAACACTG GAACTATAAA AAACGATAA
 
Protein sequence
MDIDDILAAF QIFDHVSDID KFQSWIRTYH KIEDFEPLFL GYRYFLEICG IRIVDEISED 
FSLNLEMDDY FSFACNADLP LDEIPNSCEK VIVIKNIWRY FEPIKNAKDW AELKTIIHQT
EEISKIFREI FKNANVTENF PEKEISRFAA LHYTHIFFND TSRLKPAGAV VGLIKLDIDS
IGSDFFKGYA YTLEYLWYQL LEKNEFQHSL AKNIHNPATG LSSEDLQRIT EIYSHNDYED
PAFQENAVMW ATLDQLFQPL FEKCLAPKFR EYHTSSRSHF IVRDNISKSL IFPLLDRTYI
NEPYYFSDNS NDEARFKKID YHFKWLPVTY IDSGKVHDAF GTYAFIPFLL GLTSSENVSS
NNKIEILRIK HPEDGVSGYF YSYGILNKSQ YFDEQGMGWI IFLTCGTDFS GHGGSMHTSA
EKCIREIQKR GILDAKEITI DENAFRRYLK ERTETSVSDS TTPVETLIEF GESQLVEFKS
SLLWSYEKNQ ISNSTEYEVV RTIAAFLNSS GGTLLIGVDK NKNIVGLDKD YAQLKQARRV
QNRDGFEIRL NEVLNKFFGR GIRLDIDVIF ERLSEKEICR VIVKPTIEPI FLVNSNNSNH
SEFIVRSGNQ SQLLMGKEIT SYITKHWNYK KR