Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mbar_A3174 |
Symbol | |
ID | 3626863 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methanosarcina barkeri str. Fusaro |
Kingdom | Archaea |
Replicon accession | NC_007355 |
Strand | + |
Start bp | 4085740 |
End bp | 4086408 |
Gene Length | 669 bp |
Protein Length | 222 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 637702013 |
Product | 3',5'-cyclic-nucleotide phosphodiesterase |
Protein accession | YP_306638 |
Protein GI | 73670623 |
COG category | [R] General function prediction only |
COG ID | [COG1409] Predicted phosphohydrolases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.0822292 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.000980029 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGTTGACG GTATAAACCA GCTGGAACCG AACCTTGTCG TGATTACAGG TGACCTGACC GAGAATGGGT TTTCAGCAGA ATATGATGGA GTAAAGCGGT TTATTGACAG GATTGAATGT AAAAATAAAA TTCTTGTTCC GGGAAATCAT GATTCAAAAA ATGCAGGATA TGTGCACTTT GAAGACCTCT TCACAGACAG GTACTTTTCA CGGAATTTTG AGAATGTTAC GGTTGTCGGG GCCGATTCTT CACAGCCCGA TCTTGATGAA GGTCATCTGG GCAGGGAAAA CTATGGCTGG ATCAAAGAAG CTTTTTCAGG AGAAAATTTC AAGGTTTTTG CCATGCACCA CCACCTTGTT CCTATACCAC TGGCAGGCAG GGAGAATACT GTCCTTGTGG ATGCAGGCGA TGTGCTCGAA CTTCTGAACC GCTGCAAGGT GAATCTTGTC CTCTGCGGGC ACTGCCACAT TCCCTGGGTC TGGAACCTCA ATAACATGCT TGTGGTAAAT GCAGGCACTT TTTGTTCTTC CAAAACAAGG GGAAAGACAA AGCAATGTTA TAACCTCATC CAGGCTGACA AAGAGAATCC CGCTGGGGAC TGGAAAGTCC GTGTATCCAG AGTTTTTTCA AAAGGAGATC GGGAACTGGT TACTGAAACA GTAATGTAA
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Protein sequence | MVDGINQLEP NLVVITGDLT ENGFSAEYDG VKRFIDRIEC KNKILVPGNH DSKNAGYVHF EDLFTDRYFS RNFENVTVVG ADSSQPDLDE GHLGRENYGW IKEAFSGENF KVFAMHHHLV PIPLAGRENT VLVDAGDVLE LLNRCKVNLV LCGHCHIPWV WNLNNMLVVN AGTFCSSKTR GKTKQCYNLI QADKENPAGD WKVRVSRVFS KGDRELVTET VM
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