| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbar_A3119 |
|---|
| Symbol | |
|---|
| ID | 3626570 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosarcina barkeri str. Fusaro |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007355 |
|---|
| Strand | - |
|---|
| Start bp | 4009517 |
|---|
| End bp | 4011169 |
|---|
| Gene Length | 1653 bp |
|---|
| Protein Length | 550 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 637701958 |
|---|
| Product | CRISPR-associated Cas1/Cas4 family protein |
|---|
| Protein accession | YP_306586 |
|---|
| Protein GI | 73670571 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1468] RecB family exonuclease
[COG1518] Uncharacterized protein predicted to be involved in DNA repair |
|---|
| TIGRFAM ID | [TIGR00287] CRISPR-associated endonuclease Cas1
[TIGR00372] CRISPR-associated protein Cas4 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00000141365 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACGAAC CTGTAGCTAG GTATGAAGAG CCGAAACTGA TTCCTGCAAG AATGCTAAAT
GAATTTGTAT ATTGTCCACG TTTATGTTAT ATGGAGTGGG TACAGGGAGA ATTTGAGCAT
AGTGAAGATA CTTTGGAAGG AAAATTTGTT CATCGAAATG TAGATCAAGA AAAAACCAAA
GATTTACAAG GTGAAGAAAA GAAGATTCAT AGCACTTCTG TGATGCTTTC GGGTTATGAG
ACTGGTGTGA TTACAAGAAT TGACCTTCTA GAAGAATCAA ACGGAAAAGC CGTGCCAGTT
GAATACAAAA AGGGCTATGT TCCAGATATT CCTGAAAAAG TCTATGAACC GGAGAGAATT
CAATTATGTG CTCAAGGCTT GGTGTTGAAA GAAAAGGGAT TTGATTGCAC GGAAGGAGTT
ATTTATTTTG TTAATTCAAA AAAAAGAGTG GCAGTTGACT TCGATGAGGA GCTTATCCAA
AAAACTAAAG AAACAATTTT GAGGTTTCTT GAGACAATTG GAAAAAAAGA GATTCCGGCT
CCTCTTGAAA ATAGTCCTAA ATGCTCCAGA TGTTCACTTT CGGGAATTTG TCTTCCCGAT
GAGACTAATA TTTTAAAAGG TTCAGCCTCA CAAGTTAGAT CATTAAATGT ATCTAAAGAC
GACAAAAAAC CCGTTTATGT TACTGGATGG GGAACTTCAG TACACAAGAA AGGAGATAGG
TTGGTTATTA AGAAGAATGA TGAAGAACTG CAGAGCGTCC CGTTAAGGCA AATATCCCAA
CTATCAATTT ATGGGGATGC TCATATTTCT TTGCCGGTAC TAAGAAGTTT AATTGAAATG
AATGTGCCTG TGTGTTATTT TTCCTTTGGG GGTTGGTTTT ATGGGCTATC ACATGGGGTT
ATGAGTAAAA ATGTTGATTT AAGGATTCAT CAATATCAGA CTGCTTTTGA TTCAGAAAGG
TCACTGGCAA TTTCTCGCAA GATGATTGCT GGCAAAATCA AAAATTGTCG GACTTTATTA
AGAAGAAACG ACACTGAAGT TTCAGAGAAA ATTCTCTCTC AATTAAATTC TCTTGAAAAA
AAGGCATCGA ATGCAAAAGA AATCGGACAG CTTTTAGGTA TAGAAGGAAC TGCAGCCCAA
ATTTATTTTT CGAGATTTGG CAATATGTTG AAACAAGATC TTGACTGTAA ATTTGAAAAT
CGAAATAAAA GGCCTCCTAC CGACCCGGTA AATGCTGTTC TTTCATATTT ATATGGTATA
TTGACAAAAG AAGTCTTTGT AACTTTATTT TCGGTAGGTT TTGATCCTTA TATGGGTTTC
TATCACCAAC CTAAATATGG AAAACCAGCT CTAGCACTTG ATTTAATGGA AGAGTTTCGG
CCATTGATAG CAGATTCTGT TGCTCTAACG CTTTTCAACA ACAAAACAGT GACACTAGAA
GATTTCGAAA TAACAAATTT TGGAGTTTCG TTAAAGGACA ATACAAAAAA GAAAATAATT
AGTGGATATG AGAGAAGAAT AAATACGGAA ATAACTCACC CTATCTTTGG GTACAAAGCA
AGTTATAGAA GAATTTTGGA AATACAGGTT AGACTTTTAG GCAGAACCGT TACTAAAGAA
ATAGAATCAT ACACTCCATT TTGTACAAGA TAA
|
|---|
| Protein sequence | MDEPVARYEE PKLIPARMLN EFVYCPRLCY MEWVQGEFEH SEDTLEGKFV HRNVDQEKTK
DLQGEEKKIH STSVMLSGYE TGVITRIDLL EESNGKAVPV EYKKGYVPDI PEKVYEPERI
QLCAQGLVLK EKGFDCTEGV IYFVNSKKRV AVDFDEELIQ KTKETILRFL ETIGKKEIPA
PLENSPKCSR CSLSGICLPD ETNILKGSAS QVRSLNVSKD DKKPVYVTGW GTSVHKKGDR
LVIKKNDEEL QSVPLRQISQ LSIYGDAHIS LPVLRSLIEM NVPVCYFSFG GWFYGLSHGV
MSKNVDLRIH QYQTAFDSER SLAISRKMIA GKIKNCRTLL RRNDTEVSEK ILSQLNSLEK
KASNAKEIGQ LLGIEGTAAQ IYFSRFGNML KQDLDCKFEN RNKRPPTDPV NAVLSYLYGI
LTKEVFVTLF SVGFDPYMGF YHQPKYGKPA LALDLMEEFR PLIADSVALT LFNNKTVTLE
DFEITNFGVS LKDNTKKKII SGYERRINTE ITHPIFGYKA SYRRILEIQV RLLGRTVTKE
IESYTPFCTR
|
|---|
| |