| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbar_A2594 |
|---|
| Symbol | |
|---|
| ID | 3626778 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosarcina barkeri str. Fusaro |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007355 |
|---|
| Strand | + |
|---|
| Start bp | 3278659 |
|---|
| End bp | 3280632 |
|---|
| Gene Length | 1974 bp |
|---|
| Protein Length | 657 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 637701453 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_306084 |
|---|
| Protein GI | 73670069 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3920] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0722689 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.479427 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAAA TCGAGCAATT TTCAGCAAAG AACCCGAATC CTGTGATCAG TATTGCAAAG
GATAGAACAG TTCTTTACTC AAATGAAGCA GGTGAGCCTT TACTACATAC ATGGGGTGTG
AGAGTCGGAG AAAAGTTACC TTACTGTATC GGAGATTTCG TGCAAAAAGC AATTTCACAG
AATAGACCGG AAAAAATAGA AGTTAAAGTG GGAAGAAGAG TATACTTGAT TTCTTTTCAT
CATTTCACCG AAGAAGAATT CACAAACCTC TATGGATTTG ATATAACCGA CCAGAAAAAG
CTTGAAGAAA AACTCCGTAT CAAGGAAAAG CAGAACGACA TTCTCTACAG GATAGGTAAA
ATCGCTCTTA AATATGAAAA CCTGCAAGAC TTTCTGGATG AAAGCGTAAA GCTTATTGTA
AGTATACTTG AAGTAGAGTA CTGTAAAATT TTGGAATCCA TGCCTGATGG AAACTTTCTG
CTAAGAGCCG GGTTCGGATG GAAACCCGGG CTTGTAGGGA AAGCTATTGT TGAAGGGGAA
AAGGAGTCAC AGGCAGGGTA TACCTTGCTT TCAAGGACGC CTGTGGTTGT AGAGGATTTT
GAAAAAGAAA GCCGCTTTAA GAAACCGGAA ATACTGAGAA TGCACGAAGT GGAGAGTGGA
GTAAGCGTTA CAATAGGAAG TATTGGAAAT ATCTTTGGAG TGCTGGGTGT CCATTCCACG
AGAAAAAGGA AGTTTACATC CGACGACACT TACTTTCTCA GTTCAGTAGC TTTTTTAATT
GCACAGGTAA TAGAACGCAA AAAAGCTGAA GAAGCCCTGA AAGAGGCACA CAACAGTTTA
GAAGAAAAAA TTAGAGGACG TACAGTAGAG CTTGAGACGG CTTATCTGTC ATTAAAAGAA
AGCGAAAGAA GCCTAGCCGA AGCTCAAAAA ATGGCTCATG TTGGAAATTG GGATATAAAT
TTTATTACTG GGGAATCACA CTGGTCTGAG GAGACATGTC GTATTTTTGG GCGTAGTCTT
CAAAATAATA GCATAGACTA TGACGAATTT TTAAATTATG TACACCCTGA CGATCGGGAC
TATGTGGATA AAATAATTGA GAACAGATTA AAAGGAGGTC CTCAAGACAT TGATTACCGA
ATTGTCTTAG CTAACGGAGA AGAACGCATA GTCCATGATG AAATGGAAGT CATTTTCGAC
GAGAATAATG TTCCGATTAA AGCCAGAGGA ATAGTTCAGG ATATTACTGA ACGTAAAAAA
ACTGAGAAAG CTCTGGCAAA TCTTGAAACT GCTCGCCAGA AGGAAATTCA TCACAGAGTT
AAAAATAACC TGCAGGTTAT TTCTTCCCTT TTGGACCTTC AGGCTGAAAA GTTCAACAAA
AGAGAGTGTA TTAAGGACTC AGAAGTCCTG AAAGCTTTCA GGGAAAGCCA GAATAGAGTT
GTATCAATTG CTCTGATCCA CGAAGAACTT TATGAAGGTG CAGAAACCGA TAAAGTTGAT
TTTTCTCTAT ACCTGCAGAA ACTTGTCGAG AATTTTTTCC AGACTTACAG GCTCGGAAAT
CTGGACATCA GTTTGAAAAC AGATCTTAAA GAGAAAGTTT TCTTTGACAT GGATATTGCA
GTCCCATTAG GAATGGTTAT TAACGAACTC GTTACCAATT CCTTCAAGTA TGCATTTACA
AACAGGAAAA CAGGAGAAAT CCAGATTAAG CTCTTCAGCG AAGAGAATAA AGATGAAGCG
AATAATAGAA ATGTAGCTGA TAGAAAAAGT ACCAGATATA CTCTTATTGT CTCAGATAAT
GGAATTGGCA TTCCAGAGAA CGTCAATTTT GAAACGCCAG AAACGCTTGG TCTGCAGCTT
GTAAATCTTC TGGTAGATCA GTTAGAAGGT AAGGTCAAGC TAAAGAGGGA TAAAGGAACT
GAATTTGTCA TAGAATTCAG TGTGGAAGAA AAAGTGATTA AGAAAAAAGA CTAA
|
|---|
| Protein sequence | MKKIEQFSAK NPNPVISIAK DRTVLYSNEA GEPLLHTWGV RVGEKLPYCI GDFVQKAISQ
NRPEKIEVKV GRRVYLISFH HFTEEEFTNL YGFDITDQKK LEEKLRIKEK QNDILYRIGK
IALKYENLQD FLDESVKLIV SILEVEYCKI LESMPDGNFL LRAGFGWKPG LVGKAIVEGE
KESQAGYTLL SRTPVVVEDF EKESRFKKPE ILRMHEVESG VSVTIGSIGN IFGVLGVHST
RKRKFTSDDT YFLSSVAFLI AQVIERKKAE EALKEAHNSL EEKIRGRTVE LETAYLSLKE
SERSLAEAQK MAHVGNWDIN FITGESHWSE ETCRIFGRSL QNNSIDYDEF LNYVHPDDRD
YVDKIIENRL KGGPQDIDYR IVLANGEERI VHDEMEVIFD ENNVPIKARG IVQDITERKK
TEKALANLET ARQKEIHHRV KNNLQVISSL LDLQAEKFNK RECIKDSEVL KAFRESQNRV
VSIALIHEEL YEGAETDKVD FSLYLQKLVE NFFQTYRLGN LDISLKTDLK EKVFFDMDIA
VPLGMVINEL VTNSFKYAFT NRKTGEIQIK LFSEENKDEA NNRNVADRKS TRYTLIVSDN
GIGIPENVNF ETPETLGLQL VNLLVDQLEG KVKLKRDKGT EFVIEFSVEE KVIKKKD
|
|---|
| |