| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbar_A2415 |
|---|
| Symbol | |
|---|
| ID | 3625456 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosarcina barkeri str. Fusaro |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007355 |
|---|
| Strand | + |
|---|
| Start bp | 3050887 |
|---|
| End bp | 3052464 |
|---|
| Gene Length | 1578 bp |
|---|
| Protein Length | 525 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637701283 |
|---|
| Product | transmembrane efflux protein |
|---|
| Protein accession | YP_305915 |
|---|
| Protein GI | 73669900 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.0900515 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCTTGCAA TGTTTGTGCT TGTTATTGAT ACGACAATAA TGAACGTTTC GATTTCGACA
CTTATCAAAG ATTTCAACAC TAACGTTGCT ACTGTCCAGG CTGCCATTAC ACTCTATTCT
CTTGTAATGG CATCACTTAT GATCACCGGA GGAAAACTTG GAGATATCAT TGGTCGAAAA
AGGGCATTCA GGACAGGACT GATCATCTAC GGTAGTGGTT CGTTCCTGAC TGCAATCAGC
CCGACAATGG CTGTGCTGTT TATAGGCTGG TCAATCCTTG AAGGGCTAGG AGCTACCCTT
GTCATGCCTG CCATCCAGAC ACTCGTGACC TCAAACTACA GCGGAAAGGA CCGTGCACTT
GCTTATGGTA TATTAGGTGG AATTGTTGCA AGCGCAATTG CCCTCGGGCC CATAATAGGA
GGCTGGCTGA CAACTGAGTA CACCTGGAGG TTTGCCTTTG GTGGGGAGGT TGTGATCGTG
GTCATTGTCC TGCTGTTAAG CCGGTATATT CTGGATGCAC CCCTTGAGAC CGAAGAGAAA
CCCAGGATGG ATATAGTCGG CTCGATAATC TCTGCGCTGG GAATGGGGCT TATTGTCTTT
GGGATATTGT TGGCGGGGAC CTATGGCTGG TGGGAGGCAC GTCATCCCTT CTCAATAGGT
GGAATTGAAA TTTCCCCGTT TGGGCTTTCA CCTACTCCGG TATTTATTGC AGCAGGAGGC
ATTATTCTTC TGTGTTTTGC CCTCTGGGAA CTTCATGTCA TTACTCTGGG GAAGATGCCG
CTCGTAAGGC TCGATGTGCT CAGGGACCGC AGGGTTACTT CAGGCATTTT TGTCCAGATG
GTTCAGACCG TTCTTATCGG AGGCTTCCTG TTCAGCATGG CTCTTTTCCT CCAGATAGCA
CTGGGTCTCA ATGCGATGCA GACAGGCTTT CTTTACCTTC CTCTCTCCAT ACCACTTTTA
ATTGCTTCGC TCACAGCATC TCGATTATCT TCTCGCATAG CCCCAAAGCG CATTATCCAG
GTTGGGCTAC TCGTACTCAT CGCAGGGCTT TTACTGGCTA CTGCAACAAT TAATGTGGAA
GTCAGAGGGC TTGCCCTGCT AACAGGTTTT GCCTTAATAG GCATAGGTGC AGGAGTTATA
GCATCGCAGA TAATGAATCT CGTCCTTTCC CAGGTAGTTC CTGAAAGGAC AAGTGAGGCA
GCTGCTCTTA TGAGCACTTC CCAGAATTTG GGCATGGCTA TTGGAACAGC CCTTATGGGT
TCCATAGTTA TTGTGGGCCT GGTAGGAGAA GCCACTAACT TCATCGAGGA CAGTACTGGT
ATTCCAGAAA ATCTCAAGCC TTCCGTGATA TCGGCAGTAG AGGAGAACGC CCGTTTTTTG
AGCAATGAAG AACTAACAGC TATCCTGAAA GATGCTCCTC CTGACCTTTC ACAGAAGGTC
TTGAGAGTAA ACGAAATCGC CCGTATCCAC GGGATAAAAG CTTCCCTCTG GGGGCTGGTG
ATTTTTGCGA TACTCGGCAT AATTGCCTCA ATCTTTCTGC CACCTGAGAT CCTGGTTCCT
TCGCAAACAG AGAAGTAA
|
|---|
| Protein sequence | MLAMFVLVID TTIMNVSIST LIKDFNTNVA TVQAAITLYS LVMASLMITG GKLGDIIGRK
RAFRTGLIIY GSGSFLTAIS PTMAVLFIGW SILEGLGATL VMPAIQTLVT SNYSGKDRAL
AYGILGGIVA SAIALGPIIG GWLTTEYTWR FAFGGEVVIV VIVLLLSRYI LDAPLETEEK
PRMDIVGSII SALGMGLIVF GILLAGTYGW WEARHPFSIG GIEISPFGLS PTPVFIAAGG
IILLCFALWE LHVITLGKMP LVRLDVLRDR RVTSGIFVQM VQTVLIGGFL FSMALFLQIA
LGLNAMQTGF LYLPLSIPLL IASLTASRLS SRIAPKRIIQ VGLLVLIAGL LLATATINVE
VRGLALLTGF ALIGIGAGVI ASQIMNLVLS QVVPERTSEA AALMSTSQNL GMAIGTALMG
SIVIVGLVGE ATNFIEDSTG IPENLKPSVI SAVEENARFL SNEELTAILK DAPPDLSQKV
LRVNEIARIH GIKASLWGLV IFAILGIIAS IFLPPEILVP SQTEK
|
|---|
| |