Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mbar_A2030 |
Symbol | |
ID | 3627847 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methanosarcina barkeri str. Fusaro |
Kingdom | Archaea |
Replicon accession | NC_007355 |
Strand | - |
Start bp | 2564344 |
End bp | 2565246 |
Gene Length | 903 bp |
Protein Length | 300 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 637700908 |
Product | ABC transporter, permease protein |
Protein accession | YP_305544 |
Protein GI | 73669529 |
COG category | [E] Amino acid transport and metabolism [P] Inorganic ion transport and metabolism |
COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
TIGRFAM ID | [TIGR02790] nickel ABC transporter, permease subunit NikC |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.0884139 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.749678 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATTGAAA ATATAAAAAT GGCTGAAAAA CTTTCTATGA ATAAAAAAAG GCTAAGTCTA TGGCTAAGTC TATGGGAGTT TAAAAAAAAC AAACTTGCGC TCTTTGGCAT TTTGTTTATT GCTATCCTAT GTTTTCTGGC CCTATTTGCT CCCTATATCT CTCCAAATGA TCCTTTTGTC CAGAAAATTG ACGACCAATT TCTTGGCCCC TGTCATGAAT ACCCTTTAGG AACTGATGAA TTTGGACGCT GCATCTTTTC AAGAATAATT TATGGCACAC GTATCTCTCT TGGCATTGGA ATTCTCGTTG TTGCAGCTAC ATCCATTGCA GGTACCTCTC TTGGGTTGCT TTCAGGGTAC AAAGGAGGCC TGTTTGATGA AATCCTTATG AGAGGTGTAG ACGTAATACT GGCTTTTCCC AATATTATTC TTGCCCTTAT GATAGCAGGA CTGCTGGGAC CTGGGTTTTT AAGTGTCGTC CTTTCCCTTT CCCTTACTCA GTGGCCTGTT TATGCAAGGC TTGTACGTGG ACAGGTTCTC TCTTTGAAAA AGAGAGATTT TGTGGAAGCG ACAAGGGCTC TTAGACCCTC AAATTTCTAC ATCATGCGAA AACATATACT TCCAAACTGC ATGGAACCTG TAATCGTTCT TGGAACTCTT GAGATTGCCC ATGTAATAAT CTTTGCCTCT GCTCTGAGTT TTCTAGGACT TGGAATCCAG CCTCCTACGC CTGAATGGGG CTCTATGCTC AAATCTGGGA TTCCCTACCT ACTCACATAT CCTTACCTTT GTTTTATTCC AGGTCTCATG ATTATGCTTA CAGTTTTTGC TTTCAATTTT GCAGCAGACG GATTAAGAGC CGGCTTGGGA CAGTCTGCTA AACAGGAGGT GCTGGATAGA TGA
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Protein sequence | MIENIKMAEK LSMNKKRLSL WLSLWEFKKN KLALFGILFI AILCFLALFA PYISPNDPFV QKIDDQFLGP CHEYPLGTDE FGRCIFSRII YGTRISLGIG ILVVAATSIA GTSLGLLSGY KGGLFDEILM RGVDVILAFP NIILALMIAG LLGPGFLSVV LSLSLTQWPV YARLVRGQVL SLKKRDFVEA TRALRPSNFY IMRKHILPNC MEPVIVLGTL EIAHVIIFAS ALSFLGLGIQ PPTPEWGSML KSGIPYLLTY PYLCFIPGLM IMLTVFAFNF AADGLRAGLG QSAKQEVLDR
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