| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbar_A1794 |
|---|
| Symbol | |
|---|
| ID | 3625156 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosarcina barkeri str. Fusaro |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007355 |
|---|
| Strand | - |
|---|
| Start bp | 2212854 |
|---|
| End bp | 2216840 |
|---|
| Gene Length | 3987 bp |
|---|
| Protein Length | 1328 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637700676 |
|---|
| Product | cell surface protein |
|---|
| Protein accession | YP_305315 |
|---|
| Protein GI | 73669300 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1520] FOG: WD40-like repeat |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.193749 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATAAAA ACACATTAAA AATATTTATT AGTTGTTTAT TATTGTTCCT GGTGACGGCT
ACTATGCCAG CACTGGGTTC AGACTGGACA CAGTTCCAGA AAGATGTATA TAATGCAGGT
GTAACTACGG ACAGGGCACC CATAACTGAC CCAACAAACT ACTTGCTTTC CTGGAATTAT
AGCCTTGGAG GGAACATCGA TTCGGCTCCT CTAGTGGCAG GGGAAATGAT GTATGTTTTG
GCGGGTAACA ACCACATATA TGCGTTTGAC AGGACCACAG GCTCACTTGC TTGGGAACAG
AGTACAAGTG GAAGTGCTGG CTTCACTATC GGAAGTGCGG CAGTTGGAAA CGGAATAATC
TTTGTGCCTA CCTCTGATGG AAAGATTTTT GCTTTTGATG CGAAAACAGG AACCTTGAAA
TGGAATAAGA CTGTAGGCAG CGGTAAGCAG CTTGACACCC CGATTACTTA TTCTGAAGGC
AAAATATATT TCGGAGAAGC AATGGGCGGG CACAAATATT ACTGCTATGA CGAAGAAGGC
AACGAAGTAT GGAGCAGAAC ATCTACCACT CAGACAAGCA CTCAGGGATC TTACTACTGG
GCAGGAGCTG CGGTAATCGG GAACAACCTC GTTTATGGAG ACGATGATGG ACACATTATT
TCCGTAAATA AGGACACAGG AGCTGACATC TCCGAAATAG ATGTTTCTGA AGAGTTCGGG
GTAACATGTG GGAAAATCAG ATCATCAGTA CTATACGTTG AAGAATTAAA AAGGATCTAC
TTCACGTCCA CAGGAGGATA TTGTTTCGCT ATTGGGTTTA ACCCAGCAGA CGGAACATTT
AATACCAACG ATAAACACAG CGAAAAAGTT TGGTACTCCA CCACCACACC TACCTACTAT
AAAGGAAGAA TCTACATAGG TACAGGTGCT CAAATGTACA GTGCAGGAAA AGGAGTTTAC
TGCCTTGACT CCGACCTGAG TGGTGTGATC TGGAATTATC CAGCAGATGT AGTCCAGTCT
TCCCCAGCAC TCTCAACCTA CTATGATGAC GGGGACGGGG AGGTATATAT ATACTTCACA
GTAAACAACG CTACAGGCGG TGTGTACTGC CTAAAGGACT TAGCAGGTTC CACAAGCCCG
GAACTTGTAT GGAGTTACAA AGATGCAAAA AAGACACAGT ATTCTCTTCA GGGAGTTGCA
ATATCGGACG GCTGGATATA TTTTGGAGCG GATAAAAAAT ACGTTTTTGG GTTAACTACT
AAAGATTCGC AAGCGTCCAC GGCACCGAGT GCTAGTTTCA GCGGATCCCC GCTTTCCGGA
AACTCACCTC TTGAAGTTCA GTTCACAGAC AAATCTACAG GTGCTCCGAC ATCCTGGGCA
TGGGACTTTG ACAACGATGG AACGGTCGAC AGCAAGGAGC AGAACCCCTC AAATACCTAT
AATGCGGTCG GTAACTACAC CGTAAGCCTT ACGGTTGCAA ATGCAGAAGG AAGTGATTCC
GAGGTAAAGA CTAATTATAT CACTGTATCA GAATCATCTA CATCTACCGA ACTGGTTGCT
GCTTTCACTG CTGATGTAAC TAGTGGAACT GCTCCTCTGA CTGTTGATTT CACAGACAAA
TCTACAGGTG CTCCGACATC CTGGGCATGG GACTTTGACA ACGATGGAAC GGTCGATAGC
AAGGAGCAGA ATCCTAGCCA TATTTACAAT GACACAGGCA GTTACACTGT CAAACTGACC
GTCAGCAATG GAAATGACAG CGATGCCAAG GAAATCCAGG ACATGATCAA AGTCACTGAG
GAGGAACAGG AACAGCCGGT AACCTCTGAG GATAGCTGGT ACCAGTTCCA CAAGGATGCC
CAGCACAGCG GGTATACAAG CTCCACTGCT CCGGACAGCG CTAACCTTGC CTGGACTGCC
GAACCTCTTA ATGATACGTA TTCCCTTGTT CCGAGTTCAA GCGTGGCTAT TGCTGAAGGA
AAAGTATTCG GCCTCTGCAA CGGACCAACT GACGAATATG GCAACCCTCT AACTTCATAC
GGACAGCTTG TGGCTTTTGA CGAGAATACG GGACAAGAAG TATGGAATGT GACGATCGAA
GCTCCTGAAT GGGGTTCATG GTCTTCTCCT GCATATGATT CAGGAAAAGT TTTCGCATCT
GCAGGCAAAC AGACATACTG CATAAACGCT TCAACCGGAG AAGTCATCTG GACTTTCCAT
AACCCAACAG ACCTTGCTTC CTGCGACGGT GGACCTTCAA TTGGAGATGG AAAAGTCTTT
GTAAGTGACT GGGACGGAGG AAATTACTAC TGCCTTGACG AAAGTAACGG AGGGCTCCTG
TGGACTTTCA AAGTAGACGG AGCCTATGCA CAGGGCACTC CTGCTTACAA AGACGGAAAA
GTGTACCTGA CGTGCTGGAG TTCCACAAAC GCAGTCTACT GTGTAAATGC CGAAACAGGA
GAAATGATCT GGAAAAATGA CGGGTTTGAA AACGGCCCAT GCGGCTCCGT AACAATTACT
GATGAGGGGC TGTACGTTAC TGTATTCGGT TTTGGTACCT CGGACGGAAT TTACAAGCTT
GACCTGACAG ACGGAAGTGT TCTCTGGGGA AGGTCAGATG TATCTCCTTC AGATTCGACA
CCAACAGTAT TAGACGGGAA AGTATATTTG TCGACAGGAA CTTCAGGATA CAGTGAACTA
AAGACATATT GCCTTGATGC TTCCGATGGG CAGAGCCTAT GGGAAACAAA CGCTTCCGAC
AATATCGGAG ACTGGGCCTG TTCTGTAGCT GTTGCGGATG GAAAAGTATT TACTGGCGGG
GCTGCTTCCG GACTCTTTAC TGGCTCTTCA ACACTCTACG CATTTGATGC TGAAACAGGC
TCACAGGTCT GGAGTTACGA GGGTTGCGGT TGCTCCCCGG CAATTGCCGA TGGAATGGTC
TTCAGCATTG GAAGCGGAAA AATATACGCT TTCAAGGAAA CTCAAGGATC TCTCCTCGAA
GCAAAATTCA GCTCGAATAT GAGTACAGGA AAAGCTCCCC TGACTGTAAG CTTCACTGAT
GAGTCCACTG GAGAAGGCAT AACTTCCTGG GACTGGGATT TTGACAACGA TGGAACTATC
GACAGCACAG AGCAGAATCC TATCTATACT TACAATGCAA CTGGTACCTA CACTGTTAAC
CTTACGGTTT CCAACGAGGA GGGAAGCGAT TCTGAGGTAA AAACTGGGTA CATCACGGTA
GCCGAATCGT CTGCTCAAAA GGACCAGCCA GATCTTGTAG TTTCTGCCCT CAACCCTCCA
TCCAAAATTA CTGCAAATAA CCTATGTAAT ATCGGTGCCA CCATCAATAA CACCGGTGTG
GGTAATGCGG GAGCCTTTAA TGTAACTCTT TCCGTAAACG GTACGGTTGT AGATACGCAG
TCTGTATCAG GCCTTGCATC AGGTAGCAGC GAAGTAGTCA GTTTTTCATG GACACCGATT
GAGTCTGGAG ATTACATTAT TGCTGTAAAC GCAGATGCGG AAAATTTGGT AACCGAATCG
GACGAGACAA ACAATGTTCT GGAGGATTAT ATTACAGTTA CGGAGTCCTC CGGGAGTCAG
GACAACAACT CTTCATCCCA AGGCAATGGC TCTTCCTCTA CAGTTTGCCT CACTGTCAAG
ATTGCTCCAG TAGTTTCCAT TGAGGTCTCC CCTTCAGCCC TCGATTTTGG GGAACTGTCT
CCTGGAAAAA CCAGTGAGTC TCAGAATCTC ATTATCAAAA ACACAGGAAG TTGCGACGTA
AATGTTACAA CTAAAGTATC CGATTCTACC GGAGATAGTC TTTTCAGCCA GGGACTGCTA
CTGGACTCCC AGCTCTGGAA TAAATACTTG AAGGTAATAG GAAAGAACAC CCAGGAAAAT
GCGGCTGTAT CTCTCCAGGT TTCTTCTGAC TATGCAGAAT CTGGAACTAA AAAAGGAGAG
ATAACCTTCT GGGCGGAAGC AGTCTAA
|
|---|
| Protein sequence | MNKNTLKIFI SCLLLFLVTA TMPALGSDWT QFQKDVYNAG VTTDRAPITD PTNYLLSWNY
SLGGNIDSAP LVAGEMMYVL AGNNHIYAFD RTTGSLAWEQ STSGSAGFTI GSAAVGNGII
FVPTSDGKIF AFDAKTGTLK WNKTVGSGKQ LDTPITYSEG KIYFGEAMGG HKYYCYDEEG
NEVWSRTSTT QTSTQGSYYW AGAAVIGNNL VYGDDDGHII SVNKDTGADI SEIDVSEEFG
VTCGKIRSSV LYVEELKRIY FTSTGGYCFA IGFNPADGTF NTNDKHSEKV WYSTTTPTYY
KGRIYIGTGA QMYSAGKGVY CLDSDLSGVI WNYPADVVQS SPALSTYYDD GDGEVYIYFT
VNNATGGVYC LKDLAGSTSP ELVWSYKDAK KTQYSLQGVA ISDGWIYFGA DKKYVFGLTT
KDSQASTAPS ASFSGSPLSG NSPLEVQFTD KSTGAPTSWA WDFDNDGTVD SKEQNPSNTY
NAVGNYTVSL TVANAEGSDS EVKTNYITVS ESSTSTELVA AFTADVTSGT APLTVDFTDK
STGAPTSWAW DFDNDGTVDS KEQNPSHIYN DTGSYTVKLT VSNGNDSDAK EIQDMIKVTE
EEQEQPVTSE DSWYQFHKDA QHSGYTSSTA PDSANLAWTA EPLNDTYSLV PSSSVAIAEG
KVFGLCNGPT DEYGNPLTSY GQLVAFDENT GQEVWNVTIE APEWGSWSSP AYDSGKVFAS
AGKQTYCINA STGEVIWTFH NPTDLASCDG GPSIGDGKVF VSDWDGGNYY CLDESNGGLL
WTFKVDGAYA QGTPAYKDGK VYLTCWSSTN AVYCVNAETG EMIWKNDGFE NGPCGSVTIT
DEGLYVTVFG FGTSDGIYKL DLTDGSVLWG RSDVSPSDST PTVLDGKVYL STGTSGYSEL
KTYCLDASDG QSLWETNASD NIGDWACSVA VADGKVFTGG AASGLFTGSS TLYAFDAETG
SQVWSYEGCG CSPAIADGMV FSIGSGKIYA FKETQGSLLE AKFSSNMSTG KAPLTVSFTD
ESTGEGITSW DWDFDNDGTI DSTEQNPIYT YNATGTYTVN LTVSNEEGSD SEVKTGYITV
AESSAQKDQP DLVVSALNPP SKITANNLCN IGATINNTGV GNAGAFNVTL SVNGTVVDTQ
SVSGLASGSS EVVSFSWTPI ESGDYIIAVN ADAENLVTES DETNNVLEDY ITVTESSGSQ
DNNSSSQGNG SSSTVCLTVK IAPVVSIEVS PSALDFGELS PGKTSESQNL IIKNTGSCDV
NVTTKVSDST GDSLFSQGLL LDSQLWNKYL KVIGKNTQEN AAVSLQVSSD YAESGTKKGE
ITFWAEAV
|
|---|
| |