Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mbar_A1667 |
Symbol | lysS |
ID | 3626902 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methanosarcina barkeri str. Fusaro |
Kingdom | Archaea |
Replicon accession | NC_007355 |
Strand | + |
Start bp | 2057553 |
End bp | 2059100 |
Gene Length | 1548 bp |
Protein Length | 515 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 637700548 |
Product | lysyl-tRNA synthetase |
Protein accession | YP_305191 |
Protein GI | 73669176 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1190] Lysyl-tRNA synthetase (class II) |
TIGRFAM ID | [TIGR00462] lysyl-tRNA synthetase-like protein GenX [TIGR00499] lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.208313 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCATGG AAATTAACAA TGAAAAAATG TCAGATAGCC TTGTACCGTC TGACAATGAA TCTGACAATA ATGATATTTC AGATAGCAGG GTCTTTGATG ATTCTAAACT TGCAAAACTA AACGGCATCA AAAGCCAGGG ACTTAATCCG TACCCCTATA AATTTGAAAA GAATGGGGAT ATCTGTGATA TCCAGAAAAA GTTCGAGGAC TTTGAAAAGA ATGAAGGGCT AACGGTTAGA ACCGCAGGAA GGCTTTACAA TATTCGCAGG CTTGGAAAAA TGATATTTGC CGATCTTGGA GACCAGGGGG GCAGAATTCA GGTTACTTTA AGGAAAGGAA ATCTTCCTGA TGAGGATTTC AAGACTTTTA AAACCCTGGT AGATTCAGGA GATATCGTAG GTGTTCAGGG CACACTTTTC AGGACAAAAC GGGGTGAGAA CTCTATCAGC GTGTCCGAAT TCTCCCTTCT CTCAAAATCT CTCTGTGCCC TTCCCGAAAA ATTCCACGGC TTAAAAGACG TTGAAACCAG GTACAGAAAA AGGTATCTTG ACCTTATAGT CAATGCTGAT AAGAGAGAGA TTTTCGTCAT GAGGAGCAAA CTCATCTCTG AGATCAGACG ATACCTTTCT GACAGGGAAT TTCTGGAATT TGAAACTCCA ATACTCCAGA ATGTGTACGG AGGCGCAAAT GCAAGGCCTT TCACGACTTT CCATAACTGT CTCGGTCAGA AACTCTTCCT TAGAATTGCT CCTGAACTTT ATCTTAAGAG GCTTGTTGTT GGCGGTTACG AGAAGGTCTT TGAGATCTCC AAGAATTTCA GGAATGAAGA TATCGACACA ACTCATAACC CTGAGTTCAC CATGATCGAA GTCTATGAAG CTTACAGGGA TTACAATGAC ATGATGGATT TAACCGAAGG CCTAATTTCG GAACTTGTGT TCAAGCTGAC TGGCAGCTAT GAAGTTAAAA TTGGCGAAAA CACACTTAAT CTTCATACCC CCTGGAAAAG AATTTCCATG GAAGATGCCT TAAAAGAATA TGCTGGACTT GATGTTTTTG CACACTCGCT TGAAGAATTG AAACAAATCG CAATCGAAAA CAGAATCGAG GACTACGAAA AAGCAAAAAC TTACGGAGAG TTCCTTGCCT TGCTCTTTGA AGGCCTGGTA GAGGACAAGC TGATAAATCC GACTTTCATT TATGATTTCC CTGTGGAAAA CTCCCCTCTT GCCAAAAATC ACAGGTCAAA AGAAGGCTTT GTCGAGAGAT TCGAGCTCTT CTTAAATGGC TGGGAATTGG CAAATGGTTA TTCCGAACTG AACGATCCTA TTGAACAGCA AAAAAGGTTC GAAGAACAGG ACAAGAAAAG AAAGTTAGGA GACCTTGAAG CCCAGACCAT TGATTACGAT TTCGTAAATG CCCTCGGATA CGGAATGCCC CCTACAGGCG GCATGGGACT TGGAATCGAC AGGCTTACCA TGATTCTAGC GGGCCTGGAC TCTATCAAAG AAGTAATCCT TTTCCCACAG ATGAAAAGGG AAGACTGA
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Protein sequence | MSMEINNEKM SDSLVPSDNE SDNNDISDSR VFDDSKLAKL NGIKSQGLNP YPYKFEKNGD ICDIQKKFED FEKNEGLTVR TAGRLYNIRR LGKMIFADLG DQGGRIQVTL RKGNLPDEDF KTFKTLVDSG DIVGVQGTLF RTKRGENSIS VSEFSLLSKS LCALPEKFHG LKDVETRYRK RYLDLIVNAD KREIFVMRSK LISEIRRYLS DREFLEFETP ILQNVYGGAN ARPFTTFHNC LGQKLFLRIA PELYLKRLVV GGYEKVFEIS KNFRNEDIDT THNPEFTMIE VYEAYRDYND MMDLTEGLIS ELVFKLTGSY EVKIGENTLN LHTPWKRISM EDALKEYAGL DVFAHSLEEL KQIAIENRIE DYEKAKTYGE FLALLFEGLV EDKLINPTFI YDFPVENSPL AKNHRSKEGF VERFELFLNG WELANGYSEL NDPIEQQKRF EEQDKKRKLG DLEAQTIDYD FVNALGYGMP PTGGMGLGID RLTMILAGLD SIKEVILFPQ MKRED
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