| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbar_A1615 |
|---|
| Symbol | |
|---|
| ID | 3624240 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosarcina barkeri str. Fusaro |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007355 |
|---|
| Strand | - |
|---|
| Start bp | 1986731 |
|---|
| End bp | 1988494 |
|---|
| Gene Length | 1764 bp |
|---|
| Protein Length | 587 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637700496 |
|---|
| Product | oligopeptide ABC transporter, solute-binding protein |
|---|
| Protein accession | YP_305141 |
|---|
| Protein GI | 73669126 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGATTGG GATTAAAAGT AAGATTAAAG CGAACGATTA TCCTTACAAT ACTTGTTCTT
ACTTTTTGCT CAACCATATT TTCTTTAGGA GCGGCAGGGC AGGAAGATTC TGAAAACAAT
CAAACAGCCT CGGAAGAAGG ATTTTTTGAC CGGTTTATCA CATATGTAAA AAGCCTGTTC
TCAGGAGAAG GAGAACTACA GAGCTCAGGA GAAATTTCCA AAATCGGCGC TGCAGACATT
CAGCAGTCAG CAGATTCTGA GACAGCAATT TTGAGAATCG CAACTCCAGA CGTAATAGAC
TCTGCGTCCC TGGTTGGGGA TACAGGTCTG GGAGTTTTTG CTCATCTTTC AAACCCACCA
CTCATGAAAA TGGATGCGGA CGGACATATT GTAGGGCAGC TTGCAGAGAA TTACAGTGTA
TCGGAAAATA ACACGCGCTG GACTTTCTAT CTCAGAGATG ACCTCTACTG GAGCGACGGA
GAAAAAGTAA CACCAGAAGA TGTTGAGTTC TCAATCCGCT ACTACGGCGA AAAAACCCCC
TGGGCAAGCT GGATCAATGA TACCCTGGAA AACTCAACAG TTTCAGATGC CGACAATTCC
GTGACCTTCA AATTTAACAA GCCCTACAAC CGAGTCAGTA TGGAATTTGC AACCTATGAT
ATCCTTCCTG CTCATGTGTG GAAAAATATC GATGATCCAG TAGAATACAC AAACAACGGC
CCTTATGTTG GCTGCGGGCC CTACTACCTA AAACTGATAG ACCTCAATGC CGGAAAACTA
GTTTTTGAGA AAAACCCTTA CTGGAAAGGA AAGGATCCTG AATTCAAAAC TGTCGAGATC
CATTTTTACT CAAATGTGGA TGTTGCCACT CTAGCCCTTA AAAATGGAGA AGCTGACACT
TACTATAAAT ATGCAGGATC GTACCCTTAC TCAAGTATTG AGGAACTTGA AAAAACTGGG
AATTTTGACT TCATGGAAAA GACCAGCATC GGGCTTGTTT TCCTTGCCCC CAATTTGAAA
AAAGCCCCGT TTTCAGACGA GGAATTCAGG GAAGCTCTGG CCTATGCCAT AAATTATGAA
GAGCTTGCAA GGCTTGAAAC CCTTGGATAT GGAGAAGTTC CAAATCGTGG TTTTGTGCCG
CCATCCATGG AAAATTATAA GGAAACCGAA AAACTGGAAT ACAGTCCCGA AAAAGCCAGA
GAGATCCTGG AGAAAGCCGG ATACTCGGAC AGCAATGGGA ATGGAATACT GGAAGGAAAA
GATGGAAAAG ACATAAAGCT TGAAATCCTC ATCCGATCTA ATTACGCCCG CACAGGTGAA
CTTCTCGATG AATATTTTGA AAATATCGGG CTTTCTGCAG ACCTCAAAAC TGTAGATTCA
GATACCTGGA TTGCTCTTAA AGATAGTTAC AATTATGACC TGACAGTAAC GCGTTCCACT
CCCTGGGGTA TGCTTATGCA CTCAAGTTGG GGAAGCGGCT ACTTTGATTC CAGGCGGACA
GGCCAGGGAG TTATGCATAA CGTAGAAGAC CCTGTGTTCC TGCAACTCTG CGATGACATC
CTTGCAACTA CGGATTCTGC AGAACTTCAG AATTATGCAT ACGAGCTGCA GGACTATTAT
GCGGAAAATC TGCCTGCAAT TCCCCTCTAC TGGAGCAAGT CGGTTACTCC ATTTAACAGG
CACTTCGAAG GCTGGTACGC GGATCCCCTT TACGGGATAT ATAACCTGGA TACTTTTACA
AATGTAACGA AAGTGGAGGC GTAA
|
|---|
| Protein sequence | MGLGLKVRLK RTIILTILVL TFCSTIFSLG AAGQEDSENN QTASEEGFFD RFITYVKSLF
SGEGELQSSG EISKIGAADI QQSADSETAI LRIATPDVID SASLVGDTGL GVFAHLSNPP
LMKMDADGHI VGQLAENYSV SENNTRWTFY LRDDLYWSDG EKVTPEDVEF SIRYYGEKTP
WASWINDTLE NSTVSDADNS VTFKFNKPYN RVSMEFATYD ILPAHVWKNI DDPVEYTNNG
PYVGCGPYYL KLIDLNAGKL VFEKNPYWKG KDPEFKTVEI HFYSNVDVAT LALKNGEADT
YYKYAGSYPY SSIEELEKTG NFDFMEKTSI GLVFLAPNLK KAPFSDEEFR EALAYAINYE
ELARLETLGY GEVPNRGFVP PSMENYKETE KLEYSPEKAR EILEKAGYSD SNGNGILEGK
DGKDIKLEIL IRSNYARTGE LLDEYFENIG LSADLKTVDS DTWIALKDSY NYDLTVTRST
PWGMLMHSSW GSGYFDSRRT GQGVMHNVED PVFLQLCDDI LATTDSAELQ NYAYELQDYY
AENLPAIPLY WSKSVTPFNR HFEGWYADPL YGIYNLDTFT NVTKVEA
|
|---|
| |