| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbar_A1343 |
|---|
| Symbol | |
|---|
| ID | 3627416 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosarcina barkeri str. Fusaro |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007355 |
|---|
| Strand | - |
|---|
| Start bp | 1655681 |
|---|
| End bp | 1656538 |
|---|
| Gene Length | 858 bp |
|---|
| Protein Length | 285 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 637700233 |
|---|
| Product | dipeptide ABC transporter, permease protein |
|---|
| Protein accession | YP_304884 |
|---|
| Protein GI | 73668869 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.384157 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGCACTA CTGTTGTGAC AGTTAACAGG GGACTATTTA GAGGATTAAA TCTCAGGCAG
AAAACGCTTC TGATAATAGG TTTCACTTCA CTTTTATTAC TTTCAATTGT GGTTTCCAGC
GTGTTTTTAG GTGAGGAACC GCTACATACC AATTTCGGCT CTAAAAACCT TGCTCCTTCT
CTGGAACACC CATTCGGAAC AGATTGGATG GGAAGAGACA TGTTTATAAG GACTCTGGAA
GGACTGGGTT TAAGTATACT GGTTGGAGGG CTTGCTTCTA CAATCAGCAC TGTATTGACC
GTAATTTTAG GATTACTTTC AAGTGCAGGA AAAACTGCAG ACTCCTTTGT GTCGTGGCTG
GTAGACCTCT TTCTTTCAAT TCCTCATCTG CTTTTAATAA TTCTTATTTC CATCGGAATG
GGAGGAGGAG CAACAGGAGT TATTACCGGA GTTGCATTAA CGCACTGGCC AAGCTTAACA
AGGGTCGTAA GAGCAGAAAT CAAGCAACTG AAAACCCAGG AGTACATTCA TATCTCCAGG
AATCTTGGCA GGTCAAAATG GTGGATAGCT ACAAGACACA TTCTACCTCA TCTGGTTCCC
CAGATACTGT TAGGCACGAT TTTAATGTTT CCACATGCGA TTTTGCACGA AGCTTCAGTC
ACATTCCTGG GGTTCGGGCT TTCACCACAT GAACCGGCAA TCGGTATAAT TCTTTCCGAA
TCTATGAGGT ATCTTTCAGC AGGATACTGG TGGCTTGCAT TTTTCCCGGG ATTGTCGCTG
TTAATTGTAG TTCTGGCATT TGATATGATT GGAGAAAGTT TAGGAAAGCT GATGAATCCG
AAAAATGCTC ATGAATAA
|
|---|
| Protein sequence | MSTTVVTVNR GLFRGLNLRQ KTLLIIGFTS LLLLSIVVSS VFLGEEPLHT NFGSKNLAPS
LEHPFGTDWM GRDMFIRTLE GLGLSILVGG LASTISTVLT VILGLLSSAG KTADSFVSWL
VDLFLSIPHL LLIILISIGM GGGATGVITG VALTHWPSLT RVVRAEIKQL KTQEYIHISR
NLGRSKWWIA TRHILPHLVP QILLGTILMF PHAILHEASV TFLGFGLSPH EPAIGIILSE
SMRYLSAGYW WLAFFPGLSL LIVVLAFDMI GESLGKLMNP KNAHE
|
|---|
| |