| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Maqu_2573 |
|---|
| Symbol | |
|---|
| ID | 4657450 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Marinobacter aquaeolei VT8 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008740 |
|---|
| Strand | - |
|---|
| Start bp | 2884424 |
|---|
| End bp | 2886160 |
|---|
| Gene Length | 1737 bp |
|---|
| Protein Length | 578 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 639812554 |
|---|
| Product | alpha amylase, catalytic region |
|---|
| Protein accession | YP_959835 |
|---|
| Protein GI | 120555484 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0366] Glycosidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000337914 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTCAGC CACTGAAGAG CAAGCTGCAA GGTATGCTCG AGGTCGTCTA TCCCTCGGTA
GATTGCGACT TTCTGGCGGA GCAGTTACTG GCCACCATGG GGCTGGCGCC CAATGCCGAC
GCCCCACCGG CCCACCAGAA CCATTGGGAC GAAACTGATG TGTTGCTGAT TACCTACGCG
GACACGCTTC AGCAACCGGA CGAGAAGCCG CTGGTGACGC TCAAGCGCTT CCTGGATGAG
TGCCTTAAGG ACTCCGTTTC CGCGGTACAC ATACTGCCGT TTTTTCCCTT CAGCTCTGAT
GATGGCTTTT CGGTGATGGA TTACCTGGCG GTGAATGAGA GTCACGGTGG CTGGCCGGAA
ATTGAGGCCA TTGCCCGGGA CTACAAGTTG ATGTCCGATC TTGTGATCAA CCACATGTCG
GCCCGCAGCC GGTGGTTCGA CAACTATAAG AAGCGCATCG ACCCGGGTAA GGACTATTTC
TTTGAAGGCA ACCCGAAAGA CGACCTCAGC CAGGTAGTGA GGCCACGTAC GTCGCCCCTG
CTCAATCCGG TGCAGACCGA CGACGGCGAG CGCTATGTGT GGTGCACCTT CAGTGAAGAT
CAGGTAGACC TGAACTTTGC CAACCCGCAG GTACTGTTGG AGTTTGCGGG GATCATCCGC
CAATACCTGG AACGGGGTGT GATGATTTTC CGTATGGATG CCGTGGCCTT TCTCTGGAAA
GAGCCGGGCA CGCCGTGTAT TCACCTGCAG CAAACCCACG AGCTGATCAA GATTCTGCGC
TTGCTGATTG AACATCACAC GCCGGACGCG GTGGTGATTA CCGAAACCAA CGTGCCCAAC
CGGGAGAACC TGACTTATTT TGGCAATGCC AACGAAGCCC ATGCCATCTA TAACTTTTCG
TTGCCGCCCC TGCTGATCAA CACGCTGGTG ACCGGCAATT GCCGACATCT GAAAACCTGG
CTGATGAGTA TGCCCCCGGC GCAGCTGGGC ACCACCTATC TGAACTTTAT CGCTTCCCAC
GACGGCGTTG GTCTGCGGCC CACAGATGGC CTGCTGACCG AAGATGAAAA GCAACGCCTG
ATCAACACCA TGGAGTCGTT TGGGGGTAAG GTGTCCTACC GCCGGACGGC CGACGGGCGG
GATCAGCCCT ATGAGATGAA TATTGCGCTC TGGGATGCGC TCAAAGGAAC CACAGAAGGC
GGTGCTGACC ACTGGCAGCT CGCACGATTC CTGTGTGCGC ATACCATTAT GCTGGCCCTC
GAGGGCATTC CCGCCTTTTA TATTCACAGC TTGCTGGCCA CGGAGAACGA TCAGGCGCGG
GTGGAGCATA CCGGGCGCCT GCGCTCCATT AACCGCAGTC AATGGCAGTT GTCGCAACTG
GAGGAAACCC TCGCAGATCC ACTGACCCAC CACAGCAAGG CATTCCGGGA GCTGAAGCGC
TTGATTGCCA TACGCCGTGC TCAACCTGCT TTCCATCCGA ACGCCACGCA GTTCACCTTA
CACCTGGGGT TGCAGTTGTT CGGGTTCTGG CGCCAGAGCA TGCGCCGGGA GCAGTCGGTG
TTCTGTATCC ATAACATCAG TCCCGAGGTG CAGCAGGTGG CGCTCAGTGA TATTAATCTG
ATTGGAACGG ATCGTTGGGT AGACTTGATC TCCGGAATGG AGGTGGATGA TCTGGCTGGG
TCAATCACCC TGAAGCCGTA TCAGAGTGTG TGGTTGTCCA ACCAGCAGAG ACGCTGA
|
|---|
| Protein sequence | MTQPLKSKLQ GMLEVVYPSV DCDFLAEQLL ATMGLAPNAD APPAHQNHWD ETDVLLITYA
DTLQQPDEKP LVTLKRFLDE CLKDSVSAVH ILPFFPFSSD DGFSVMDYLA VNESHGGWPE
IEAIARDYKL MSDLVINHMS ARSRWFDNYK KRIDPGKDYF FEGNPKDDLS QVVRPRTSPL
LNPVQTDDGE RYVWCTFSED QVDLNFANPQ VLLEFAGIIR QYLERGVMIF RMDAVAFLWK
EPGTPCIHLQ QTHELIKILR LLIEHHTPDA VVITETNVPN RENLTYFGNA NEAHAIYNFS
LPPLLINTLV TGNCRHLKTW LMSMPPAQLG TTYLNFIASH DGVGLRPTDG LLTEDEKQRL
INTMESFGGK VSYRRTADGR DQPYEMNIAL WDALKGTTEG GADHWQLARF LCAHTIMLAL
EGIPAFYIHS LLATENDQAR VEHTGRLRSI NRSQWQLSQL EETLADPLTH HSKAFRELKR
LIAIRRAQPA FHPNATQFTL HLGLQLFGFW RQSMRREQSV FCIHNISPEV QQVALSDINL
IGTDRWVDLI SGMEVDDLAG SITLKPYQSV WLSNQQRR
|
|---|
| |