Gene Maqu_1116 details

Gene Information

• Locus tag: Maqu_1116
• Symbol: secD
• ID: 4654690
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Marinobacter aquaeolei VT8
• Kingdom: Bacteria
• Replicon accession: NC_008740
• Strand: +
• Start bp: 1267061
• End bp: 1268935
• Gene Length: 1875 bp
• Protein Length: 624 aa
• Translation table: 11
• GC content: 56%
• IMG OID: 639811081
• Product: preprotein translocase subunit SecD
• Protein accession: YP_958395
• Protein GI: 120554044
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0342] Preprotein translocase subunit SecD
• TIGRFAM ID: [TIGR00916] protein-export membrane protein, SecD/SecF family; [TIGR01129] protein-export membrane protein SecD

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.818418
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCTGAACA AGTATCCTCT CTGGAAAAAC CTGGTCATCG TGTTCGCACT GGTGATTGGT 
TTTATCTATG CCTTACCGAA CTTTTTCCCT GACGATTACG CTATCCAGAT CACCGGCGCC 
CGTGGCAGCA CCGAAGTTGA GCAGCGAGTG CTTGATCGCG CCCTTGCCAA GCTTGAGCAG 
GAAGGCATCG AAGTCAAATC AAGCCTATTG GAAGAGCGGG ACGCGCTGAT CCGCCTCACC 
AGCTCCGATG AGCAGCTGCG GGCACGCCCC GCTGTTCAGG CGGCCCTTGG CAACGAATAC 
CTGGTGGCCC TGAATATGGC GCCGTCAACG CCGGGCTGGC TGCGTAGCCT TGGAGCAGGC 
CCAATGAAAC TGGGGCTGGA TTTACGTGGT GGTGTTCACT TCCTGTTGGA GGTGGATATG 
GAAACGGCTT TGAATCAGCG TCTGGAAGCG TTGTCTGGTC AGATCAAGCG AGAGCTGAGG 
GAAGAGCGCA TCCGCTACCG CGGTGGCGAC ATTGAGGATC AGGCCCGCAT TGTACTGAGC 
TTCCGTGACG AAGCTGCACG TAGCGAGGCG TTTGAGCTGG TTCGCGATCA GTACAACGAG 
TTCCTGTTGG ATGAGACAAC AGAAGGTGAA GAGTTTCTGC TGACGCTGAC ACTGTCCGAA 
GCAGAAGTTC GGAACATCCA GGAATACGCT CTTGAACAGA ACCTGACCAC CATCCGCAAC 
CGGGTGAATG AACTGGGCGT GGCCGAGCCG CTGGTTCAGC GTCAGGGGGC AGACCGCATT 
ATTGTAGAGC TGCCAGGTGT ACAGGATACC GCTCAGGCCA AGCGTGTACT TGGCGCGACG 
GCTAACCTGG AATTCCGGAT GGAAGCTCGG CAGGATGCGC CGTCCGCCGA GACCGAACAG 
TTTCCTTTCC GGGATAATCC ACAGCGTACC GCTCGTCTTG AGCGGGATGT GATTGCCACT 
GGTAACAACG TTGCCAATGC CCAGCAGGCG TTCGATGAGA ATGGCCAGCC GCAGGTCAAT 
ATCACCATGG ACTCCGTTGG TGGTGACCTG ATGAATCGGG CGACTCGCAA TAGCATCGGC 
CGCCGTATGG CAGTGTTGTT CATTGAATAC CGCACCGAAA CCGAGACCCG GGAAGTTAAC 
GGAGAAATCG TTGAAACTGA AAACCGGGTC GTGGAAAAAG GCATTATCAG CCTGGCGACA 
GTGCAGTCAG CGCTGGGGAG CAGCTTCCGG ATTACTGGTC TGGATTCCAT CCCCGAAGCG 
GCTGAGCTCG CACTGCTGCT GAGGGCCGGT GCTCTGGCTG CGCCCATGTA CTTTGTGCAG 
GAGCGCACCA TCGGGCCAAG CCTGGGGCAG AAGAATATCG ATGCCGGGAT GATGTCGGTG 
ATGCTCGGCT TCGGGCTGGT GTTGCTTTAC ATGCTGGTGT TCTACCGCGG CTTCGGATTG 
GTGGCCAATG TTGCGCTGAC GCTTAACCTG ATGTTGCTGG TTGCATGCAT GTCAATCCTA 
TCTGCCACGC TGACGTTGCC GGGTATCGCG GGTATCGTTC TTACGGTGGG TATGGCCGTT 
GATGCGAACG TTCTGATCTT TGAACGTATC AAGGAAGAGC TGAAGGCGGG TGTGCCGCCA 
CAAAGCGCCA TTAATGCCGG TTATGGTCGC GCCTTTGTGT CGATTTTCGA TGCCAATATC 
ACAACCCTTC TGGTTGCCGT CATTCTGTTT GCCATGGGCT CCGGACCGGT GAAGGGCTTC 
GCAGTTACCC TGTGTATCGG TATTCTCACT TCCATGTTCT CGGGCCTGAT GGTGAGCCGC 
GGCATAGTGA ATCTGGTTTA TGGCGGTCGC AGGGTCGAGA AATTGTCCAT CGGGGGGAAG 
CTTGAAAATG CCTGA 

 

Protein sequence

MLNKYPLWKN LVIVFALVIG FIYALPNFFP DDYAIQITGA RGSTEVEQRV LDRALAKLEQ 
EGIEVKSSLL EERDALIRLT SSDEQLRARP AVQAALGNEY LVALNMAPST PGWLRSLGAG 
PMKLGLDLRG GVHFLLEVDM ETALNQRLEA LSGQIKRELR EERIRYRGGD IEDQARIVLS 
FRDEAARSEA FELVRDQYNE FLLDETTEGE EFLLTLTLSE AEVRNIQEYA LEQNLTTIRN 
RVNELGVAEP LVQRQGADRI IVELPGVQDT AQAKRVLGAT ANLEFRMEAR QDAPSAETEQ 
FPFRDNPQRT ARLERDVIAT GNNVANAQQA FDENGQPQVN ITMDSVGGDL MNRATRNSIG 
RRMAVLFIEY RTETETREVN GEIVETENRV VEKGIISLAT VQSALGSSFR ITGLDSIPEA 
AELALLLRAG ALAAPMYFVQ ERTIGPSLGQ KNIDAGMMSV MLGFGLVLLY MLVFYRGFGL 
VANVALTLNL MLLVACMSIL SATLTLPGIA GIVLTVGMAV DANVLIFERI KEELKAGVPP 
QSAINAGYGR AFVSIFDANI TTLLVAVILF AMGSGPVKGF AVTLCIGILT SMFSGLMVSR 
GIVNLVYGGR RVEKLSIGGK LENA