Gene Maeo_1080 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMaeo_1080 
Symbol 
ID5326387 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethanococcus aeolicus Nankai-3 
KingdomArchaea 
Replicon accessionNC_009635 
Strand- 
Start bp1127483 
End bp1128634 
Gene Length1152 bp 
Protein Length383 aa 
Translation table11 
GC content26% 
IMG OID640788476 
ProductCRISPR-associated RAMP Csm4 family protein 
Protein accessionYP_001325269 
Protein GI150401503 
COG category[L] Replication, recombination and repair 
COG ID[COG1567] Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) 
TIGRFAM ID[TIGR01903] CRISPR-associated RAMP protein, Csm4 family 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.212277 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTATAATA TTATAAAACT TATCCCAAAG GAAAATAGCA AATACCATTT TGGAGAAGGG 
GATTTAACTG AAAGTTCGAC TATATTACAT TCTCATAGTT TGTTTTCTGC GCTTGTAAAT 
AATTTTGTTA GGTTATACGG CGATGAGGAA TTTAAAAAAT ATGCGGAGAA AATAAAAGAA 
TTGAGAATAT CGTCGCTATA TCCTGCAATA TATCAATTTA ATTTAGATAA TTTGAATAAA 
ATCAAGCAAG AAATACTGTT TATACCAAAA CCTATGTTAA AATTAGGATT TGATGACAAT 
ACTACAAAAG AATTAGAAGA AAAACCAAAA GATGTTAAAA AAATTAAATT TATATCATTA 
AATGCTTTAA AAGACCATAA TAAAAAGGAA TTGAAAAAAA TAACCATTGG TAAAGAGTAT 
CTAATATCTG ATGAAGAAAA AAAAGAATTT GAATATAAGA ATCCTGAAAA TATGGATTTA 
TTTAAAAAAA TAATAGAACA AAAGGTTTCA ATAGATAGAA TAAAAGGAAC TACTCTTGAA 
GATGATGACA AGGGGCAGTT ATATTCAATC GAATTTATAA AACCTTTAAG AAAAAAGAAT 
AAAAAAGATA ATAAAAAAGA TAAAACGGAC AAGAATAATA AAAATATAAT AAATATCGTT 
GGATTTTATT TTTTAATTGA TTTTATGGGC ATTAATGGAG ATTTAGCAAA AAAAATCAAT 
GCATCCATAA ATTTAATTAA AGATGAAGGA TTGGGTGGAA AAAGGAGCAT TGGAGCTGGA 
ACTTTTGAAG ATATTATAAT CGATGAATTC AACGAAGATT TAAATAAAGA ATATATCTCC 
AAAGAGAAAA GACTAACTTT ATCCATTGCA GTTCCAAATG ACGAAAAAGA ATTTGAAAGT 
TTTTGCAATT ATCAACTAAT TAAAATCGGA GGTTATATTT ACCCTTCACC AAATCATATG 
GAGCACATTA CAAAACTTAA AAAGAATATA TATGCAATTG CAGAAGGTTC CATATGTGAT 
AAAGAAATCA AAGGTAAGAC TGAAAATTTA AGACCTGATG AGACAATTCA TGAAGTAATA 
CTTAATGGAC ATGCAATTTC CATTCCAGTA ATATTCTATG AAGAATTAAA TGAGGAGGAG 
GGGAGATTAT GA
 
Protein sequence
MYNIIKLIPK ENSKYHFGEG DLTESSTILH SHSLFSALVN NFVRLYGDEE FKKYAEKIKE 
LRISSLYPAI YQFNLDNLNK IKQEILFIPK PMLKLGFDDN TTKELEEKPK DVKKIKFISL 
NALKDHNKKE LKKITIGKEY LISDEEKKEF EYKNPENMDL FKKIIEQKVS IDRIKGTTLE 
DDDKGQLYSI EFIKPLRKKN KKDNKKDKTD KNNKNIINIV GFYFLIDFMG INGDLAKKIN 
ASINLIKDEG LGGKRSIGAG TFEDIIIDEF NEDLNKEYIS KEKRLTLSIA VPNDEKEFES 
FCNYQLIKIG GYIYPSPNHM EHITKLKKNI YAIAEGSICD KEIKGKTENL RPDETIHEVI 
LNGHAISIPV IFYEELNEEE GRL