Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | MCAP_0097 |
Symbol | |
ID | 3828841 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Mycoplasma capricolum subsp. capricolum ATCC 27343 |
Kingdom | Bacteria |
Replicon accession | NC_007633 |
Strand | - |
Start bp | 116085 |
End bp | 118199 |
Gene Length | 2115 bp |
Protein Length | 704 aa |
Translation table | 4 |
GC content | 21% |
IMG OID | 637823263 |
Product | 3'-5' exoribonuclease |
Protein accession | YP_424091 |
Protein GI | 83319777 |
COG category | [K] Transcription |
COG ID | [COG0557] Exoribonuclease R |
TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases [TIGR02063] ribonuclease R |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGAATCTA AAATTATTGA AATTTTAAAA ACTAACAAAC ATAAAGTTAG TTTAAATAAA CTATTGACTT ATTTTAATGC TTTAGATTAT TCATTAATTA AAAACTACTT AGACCAATTA GAAAAAAATA ATAAAATCAC TATTTCATTA GAAAATAATA TTTACTTATT AGATCAAATT TATAAAAAGG GAACTATTAA ACTAAATCCA AAAGGTTTTG GATTTATAAA TGATATTAAT AAAATTAATG ATGAAGATCA TTTTATAGCC GGAGTTGATC TAAATAATAG TATTCATCAA GATGAAGTAG TTTATATTTT AAAACAAGAA GAAGATAATA GATTAAAAGC TATAGTTATT GATCTAATTA AAAGAAATAA AGTTTATTTA ATTGGTGAAA TAAATAGAAG TTTTGATAAA AGATTTTTAG ATTTCATTCC AAACGATAAG TCATTTGATA GTTTTAGATT TGTAATTGTT AATAAAAATG AATTTAAATA TGAAGAATTT AATATTATTA AAGCAAAAAT TATAAGCTGT AAAGAACGTA AAATTTTTAT AAGACTTATA AGAATTATTG GTAATAGTAA AAAAGCAAGT GATCGCATTT TAGCAATAGC TGAAGAATTT GATATAAAAA CTAGTTTTGA TAAACAAACT CTAGATAATG CAAAACAAAT TAATTTATCA ACTGATAAAC TAGAAAAAGA GTTTTTAAAA AGACAAAATA ATTCTTTAGT TAATAAAACG ATTGTTACAA TTGATGGAAT TGATTCAAAA GATTTAGATG ATGCAATTTG TGTTGAAAAA TTAGAAAATA ATAATTATAA ACTATTTGTT GCTATTGCTG ATGTTTCTTA TTTTGTTAGA TATAAAACTA GTTTAGACAA AGAAGCTTTA TTAAGAGGTA ATTCGACTTA TTTAGCAAAT AAAGTAATTC CAATGCTACC AAACATCTTA TCTGATGATT TGTGCTCATT AAATCCAAAT ACTAAAAAAT TAGTTTTTGT ATGTGAAATG GAATTTGATA ATAACGCAAA CATGTTAAAT AAAAAAGTTT ATGAATCAGT GATTATTTCT AAAGCTAGAT TAAATTATGA TGAAGTAAAT AATTACTTTA AAACTAAAAC TTGAACTCAT GATGATAAAA CTAAAAAAAT GTTAGACATA GCTTATGAGT TGTATAAAAA ATTAGAGAAT TTAAAAGCTA AAAAGGGAAC TATTAGTTTT GATGTTAGAG AGCCAAAAAT TATTTTGGAT AAAAATTTAA ATGTAATTGA TATTAAAACA AAAACAGCTG ATCAAGCTGA AAAATTAATT GAACAATTTA TGGTAAGTTG TAATGAAGCA GTAGCTGAAT TAATCTATCA AAAAGATTTA CCTTTTTTAT ATAGAAATCA TAATAAACCA GATGAAGATG AACTAATTAA TTGATATAAA TCACTAAAGA CATTTGGAAT TAATCCTAAA TTAACTAATA AACAAGTTTT AGATCCAATA TTTATTAATC ACACTTTAAG TCAAATTAAA GAACAAATTA AAGATGAAAC TGAAGTTGAA TTATTAAATA TTTCTTTATT AAGATATATG GATAAAGCTA AATATGGATT AGAAAATATT GGTCATTTTG GTTTAGCTAG TGATTGTTAT ACTCATTTTA CTTCTCCAAT TAGAAGATAT TCAGATTTAT TAGTTCATAG ATATTTAAAA CAATATCTAA TTACAAAAGA TCTAGAAAAA ACTAGTTTAG AAAATAATGC AAATTATGTT AATAAAGTAA GTAATATTAT TAATGATACT GAAACTAAAA GTGTTGAATG TGAAAGAGAA GTTATTAAGG CATGTATGTG CGAATATATG CTAAATAAAG TTAATAATAC TTATACAGCA ACAATTTCAG CAGTTTTAAA ATTTGGAATT TTTATTCAAT TAGATAATTT AGTTGAAGGA TTAGTTCATA TTTCAAATAT GAATAGTGAT TTAGTATATG ATGAAACTAA TCGTATTTTA ATTAAACCTG ATAATACTTA TTATAGAATG GGTCAAAAAG TCAAAGTTAA ACTAATTAAT GTTGATATTA AAAAAAGAAC AATTGATTTT GTTTTAATAG AATAA
|
Protein sequence | MESKIIEILK TNKHKVSLNK LLTYFNALDY SLIKNYLDQL EKNNKITISL ENNIYLLDQI YKKGTIKLNP KGFGFINDIN KINDEDHFIA GVDLNNSIHQ DEVVYILKQE EDNRLKAIVI DLIKRNKVYL IGEINRSFDK RFLDFIPNDK SFDSFRFVIV NKNEFKYEEF NIIKAKIISC KERKIFIRLI RIIGNSKKAS DRILAIAEEF DIKTSFDKQT LDNAKQINLS TDKLEKEFLK RQNNSLVNKT IVTIDGIDSK DLDDAICVEK LENNNYKLFV AIADVSYFVR YKTSLDKEAL LRGNSTYLAN KVIPMLPNIL SDDLCSLNPN TKKLVFVCEM EFDNNANMLN KKVYESVIIS KARLNYDEVN NYFKTKTWTH DDKTKKMLDI AYELYKKLEN LKAKKGTISF DVREPKIILD KNLNVIDIKT KTADQAEKLI EQFMVSCNEA VAELIYQKDL PFLYRNHNKP DEDELINWYK SLKTFGINPK LTNKQVLDPI FINHTLSQIK EQIKDETEVE LLNISLLRYM DKAKYGLENI GHFGLASDCY THFTSPIRRY SDLLVHRYLK QYLITKDLEK TSLENNANYV NKVSNIINDT ETKSVECERE VIKACMCEYM LNKVNNTYTA TISAVLKFGI FIQLDNLVEG LVHISNMNSD LVYDETNRIL IKPDNTYYRM GQKVKVKLIN VDIKKRTIDF VLIE
|
| |