| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MCAP_0071 |
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| Symbol | rpoC |
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| ID | 3828804 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Mycoplasma capricolum subsp. capricolum ATCC 27343 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007633 |
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| Strand | + |
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| Start bp | 84918 |
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| End bp | 88685 |
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| Gene Length | 3768 bp |
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| Protein Length | 1255 aa |
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| Translation table | 4 |
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| GC content | 29% |
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| IMG OID | 637823238 |
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| Product | DNA-directed RNA polymerase beta' subunit |
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| Protein accession | YP_424066 |
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| Protein GI | 83319423 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAAAATT TAAATCGTAA AAAAGCAATA AAAATTGAAT TGGCTAACCC TGATACAATT
CGTTCATGAT CACATGGAGA AGTTTTAAAA CCAGAAACTA TTAACTATAA AACATTAAAA
GCCGAAAAAG ATGGGTTATT TGATGAAAGA ATTTTTGGTC CAACTAAAAA CTATGAATGT
GTTTGTGGAA GATATAAAAA AGCCAACCCT ATGAATAAAG GGAAAAAATG TGAAAAATGT
GGTGTTGAAT TAACTGAATC AATTGTTCGT AGAGAAAGAA TGGGACATAT TGAACTAGAA
GAACCAGTTA CTCACATTTG AATGCTTAAA GTTGCTCCTT ATAGAATTGC TGCAATTTTA
GATTTAAAAG CAAAAGAACT AGAAGAAGTA GTTTACTTTG TTTCTCATAT TGTTTTAGAA
CAAGGTAATC AAAGTCATTT TCTAGAAAAA GAAGTTTTAG ATTTAGGTTC ATCAAGAATT
ACTAAAACTA GAGAAAAATT GCAACTATCA ATTTTAGATG TTATTGATCA AATTAATGAT
CCTGAGCATA GAGATACTAA AAAGGCTAAT AGATTATTAG AAGAATTAAA AAATACTTCT
ATTCCGTTTT CAATAGATGA AGCAACTAGT TTAATTAGTA AATATACTAA TGCAAAATTT
GGAATTGGAG CTAGAGCTGT TGAATATCTA TTAGAAAAAG TAGATTTAAC TAAAGAAATT
GAAGCAATTA AAATTCAGCT TGAAAATTCT AAAAAAACCC CAAATGAAAG AACTAAATTA
TTAAAACGTT TAGAAACTTT TGATTCTTTA AAACGTTCTA AACAACGTCC TGAATGAATG
GTTATGAGAG TGATTCCAGT TATTCCACCA GACATTCGTC CTATTATTCA ATTAGATGGT
GGTCGTTTTA CTACTTCTGA AATTAATGAT TTATATAGAA GAATCATTAT TAGAAATGAA
AGATTAAAAA AAGTTAAGGA AATGGGTGCG CCTTCAATTA TTGTTAATAA CGAAAAACGT
ATGTTACAAG AAGCTGTTGA TGCTCTATTT GATAATGAAA GAAAGCCAAA ACCAGTTCAA
GGAAAAAATA AACGCCCATT AAAATCTTTA ACTAGTGTTT TAAAAGGAAA ACAAGGTCGT
TTTAGACAAA ACTTATTGGG AAAACGTGTT GATTATTCAG CTAGATCAGT TATTGCAATT
GGACCAGATC TAAAAATGTA TCAAGCAGGT TTACCAAGAG AAATGGCAAT TACTTTATTT
AAACCATTTG TTATTCAATG ACTTCAAGAT CATGAGTATG CTGAAAATGT TAAAATTGCT
GAAAAAATGT TATTACAAAA TGATCCAAAA GTTTGAGAGG CACTAGAACA AGTAATTAAA
GACAGACCTG TATTGTTAAA CCGTGCTCCT ACACTACACC GTTTAGGAAT TCAAGCATTT
GAGCCTAAAT TAGTTAAAGG AAAAGCAATT CGTTTACACC CACTAGTTAC AACTGCATTC
AATGCTGACT TTGATGGTGA TCAAATGGCA GTTCACGTAC CTATTACAAA AGAAGCTGTT
GCTGAATCAA GAGCTTTAAT GTTAGGTTCA AGCGCTATTT TAGGACCAAA AGATGGAAAA
GCTATTGTTA CTCCAGGTCA AGATATCATT TTAGGAAATT ATTATTTAAC TACTGAAGAA
AAAAACGCTA AAGGACAAGG AATGATTTTT TCAAGTTTAG ATGAAGCGTT TATGGCTTAT
AATAGTGGTC AAATTCATTT AAATTCATTG ATTGGAATTG CTTTATCAGC TTTACCTGAA
GAAAAATTTA GTGATAAAAA TCAAAGATTA AATTCTTATT TATTAACAAC TGTTGGAAAA
CTTTACTTTA ATCAAATTTT TGATGATAAT TTCCCATGAA TTAATTCAAA TAATATTTGA
AATGCTAAAG AAGCAGTTAA AGAATTTATT TATGATTTTT CACAAGATAT TGATAAAGTA
ATTGAAAATG TTCAAGTTCA ACAACCAATT AAGAAAAAAG AATTATCACT TATTATTGAA
AGATACTTTG AAACTCATGG AGCTAGAAAA ACTGCTGAAA TGCTAGATAA AATGAAAGAT
CTAGGATTTA GTTTTTCAAC AAAATCAGGA ACTACAATTT CAGCTGGAGA TGTTGTTGCT
TTTACTCATA AATATGATGA ATTTAAAGAA GCAGATCAAA AAGTTGAACA AATTACTGAT
TTTTACAATA TGGGTATGTT AACTAATAGT GAAAAGAAAC GTAGAATTAT TGATGTTTGA
TCAGAAGTTA AAGATAAAAT TCAAAATGAA TTAGCAACAG TACTACGTAA AGATGTTAAA
AATCCAATTT TTGTAATGGT TGATTCAGGA GCCCGTGGTA ATGTTTCAAA CTTTACTCAA
TTAGTTGGTA TGCGTGGATT AATGAATGAC ACTAAGGGAG ATATTAAAGA AATTCCTATT
AAGTCATCAT TCCGTGAGGG ATTAACTGTT TCAGAATATT TCGTTTCAAC TCATGGAGCT
AGAAAAGGTA TGGCTGATAT TGCCTTAAAA ACTGCTGACT CAGGTTATTT AACTAGAAGA
TTAGTTGACG TTAGTCAAGA AATTGTTGTT GTTAATGAAG ATTGTGAACC AACCAAAGGA
TTTGAAGTAT CAGCTATTAT TGATACAAAA CATGATAATG TTATTGTTCC ACTAAAAGAT
AGATTGGTTG GAAGATTCAC ATTTGAAGAC ATTTATGATG ATGATAAAAA TCTAGTTGCT
TCTGCTAATA CATTAATTGA TAAAAATATT GCTGAAAAAA TTATTATGTC AGGAATTAGT
TCAGTAATTA TTAGATCAGT TTTAACTTGT GATAATAAAC GTGGTGTTTG TCAAAAATGT
TATGGACTAA ACTTAGCTAC TGCTTCAGTT GTTAATATTG GTGAGCCAGT AGGAGTTATT
GCTGCTCAAT CAATTGGAGA ACCAGGAACT CAATTAACAA TGCGTAACTT CCATACAGGA
GGAGTTGCTG GTAATGTTGA TATTACTCAA GGACTTCCTC GTATTAAAGA ATTATTAGAT
GTTACAACTC CAAAAGGTGC TGTTGCTATA ATTTCTGAAG TTGATGGAGT AGTTAGTGAA
ATTGAAGATT ATAATGGTGT ATTTGTAATC AATATTGTTA CTGAAAATGA AGAAGTTAAA
AAATATAAAA CTGAATTTAA TTCAGTATTA CGTGTTGAAC AAGGATCAAG TGTTATGGCT
GGTCAAAAAT TGACTGAAGG AGCTATTGAT TTACACCAAT TATTGGAGTT TGGTGGAATT
CAAGATGTGC AAAATTACAT TTTAAAAGAA GTGCAAAAAG TTTATAGATT ACAAGGTATT
GAAATTTCAG ACAAATATAT TGAAATCATC ATTAAACAAA TGTTAAACAA AGTAAAAATT
ACTGATAGTG GTGATTCTGA TTTATTACCT GGAGAAATTA TTACAATTCA AAACTATAAA
GAAGTAGTAC AAGATTGTAT TGTTAAATCA ATTAGACCAC CTTTATCAAA AGCACAAATT
TTTGGTATTA AAAAAGCACC TTTAGAATCA AGTTCATGAT TATCTTCTGC TTCATTCCAA
GATACTGCTA GAGTATTAAC TAGAGCAATT ATTAAAGGAA AAGAAGATAA ATTAGAAGGA
TTAAAAGAAA ATATTATGTT AGGTAATTTA ATTCCAGCTG GTACTGGTTT AACTGGAACT
CAAGAAGTTG AACAACTAGC AGAACAATAC CATAACAATG AATATTAA
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| Protein sequence | MENLNRKKAI KIELANPDTI RSWSHGEVLK PETINYKTLK AEKDGLFDER IFGPTKNYEC
VCGRYKKANP MNKGKKCEKC GVELTESIVR RERMGHIELE EPVTHIWMLK VAPYRIAAIL
DLKAKELEEV VYFVSHIVLE QGNQSHFLEK EVLDLGSSRI TKTREKLQLS ILDVIDQIND
PEHRDTKKAN RLLEELKNTS IPFSIDEATS LISKYTNAKF GIGARAVEYL LEKVDLTKEI
EAIKIQLENS KKTPNERTKL LKRLETFDSL KRSKQRPEWM VMRVIPVIPP DIRPIIQLDG
GRFTTSEIND LYRRIIIRNE RLKKVKEMGA PSIIVNNEKR MLQEAVDALF DNERKPKPVQ
GKNKRPLKSL TSVLKGKQGR FRQNLLGKRV DYSARSVIAI GPDLKMYQAG LPREMAITLF
KPFVIQWLQD HEYAENVKIA EKMLLQNDPK VWEALEQVIK DRPVLLNRAP TLHRLGIQAF
EPKLVKGKAI RLHPLVTTAF NADFDGDQMA VHVPITKEAV AESRALMLGS SAILGPKDGK
AIVTPGQDII LGNYYLTTEE KNAKGQGMIF SSLDEAFMAY NSGQIHLNSL IGIALSALPE
EKFSDKNQRL NSYLLTTVGK LYFNQIFDDN FPWINSNNIW NAKEAVKEFI YDFSQDIDKV
IENVQVQQPI KKKELSLIIE RYFETHGARK TAEMLDKMKD LGFSFSTKSG TTISAGDVVA
FTHKYDEFKE ADQKVEQITD FYNMGMLTNS EKKRRIIDVW SEVKDKIQNE LATVLRKDVK
NPIFVMVDSG ARGNVSNFTQ LVGMRGLMND TKGDIKEIPI KSSFREGLTV SEYFVSTHGA
RKGMADIALK TADSGYLTRR LVDVSQEIVV VNEDCEPTKG FEVSAIIDTK HDNVIVPLKD
RLVGRFTFED IYDDDKNLVA SANTLIDKNI AEKIIMSGIS SVIIRSVLTC DNKRGVCQKC
YGLNLATASV VNIGEPVGVI AAQSIGEPGT QLTMRNFHTG GVAGNVDITQ GLPRIKELLD
VTTPKGAVAI ISEVDGVVSE IEDYNGVFVI NIVTENEEVK KYKTEFNSVL RVEQGSSVMA
GQKLTEGAID LHQLLEFGGI QDVQNYILKE VQKVYRLQGI EISDKYIEII IKQMLNKVKI
TDSGDSDLLP GEIITIQNYK EVVQDCIVKS IRPPLSKAQI FGIKKAPLES SSWLSSASFQ
DTARVLTRAI IKGKEDKLEG LKENIMLGNL IPAGTGLTGT QEVEQLAEQY HNNEY
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