Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | MCA2994 |
Symbol | rpoD |
ID | 3103408 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methylococcus capsulatus str. Bath |
Kingdom | Bacteria |
Replicon accession | NC_002977 |
Strand | + |
Start bp | 3166790 |
End bp | 3168589 |
Gene Length | 1800 bp |
Protein Length | 599 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637172119 |
Product | RNA polymerase sigma-70 factor |
Protein accession | YP_115383 |
Protein GI | 53802939 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACGCCAG AACAGCAGCA GCACCAGCTT AAGGAACTTA TTGCTAAGGG CAAGATGCAG GGCTACCTCA CCTTTTCCGA GGTCAACGAT CATCTCCCCA GCGACATCGT CGATCCCGAG CAGATGGAAG ACATCATCTG CATGATCAAC GACATGGGAA TCGAAGTCCA CGAGGATGTC CCCGACAACG AAGACCTGAT CCAGGACACG GCGGTGGTGG CCGAATCCGA CGAGGATGAA GCCGCGGAAG TCGCAGCGGC GCTCGCTTCG TCGGTCGATA CCGAACTTGG GCGCACCACC GATCCCGTGC GGATGTACAT GCGCGAAATG GGAACCGTGG AGCTGCTGAC CCGCGAAGGC GAGCTGAGCA TCGCCAAGCG CATCGAAGAG GGGCTCAACA TCGCCGCCAA CGAACTAGTA CGGTTCCCGG CAGCCATGGA ACACTTCCTC AAAGCCTTCG AGACCGTCGA CAACGGCGAA CTCAGACTCT CCGATCTGAT CTCCGATTTC TTCGATCCCG CCGCGGCAGA CACGGTGGCA ACCGAAGACG ACGCCGAAGC GGAAATCATC GATGAAGGCG ATACCGGCCC CGACCCCGAG CTGGTAAAAG AAAAATTGGC GGCTTTCCGC AAGCTGCACA AGGCGGCCGT CACCGCCCAC CACAAGTACG GCTACGGCCA CGAGAAGACG CAGAAGTCGT TCGATGCCCT GGCCACGGCC TTCATGGAAT TCAAGAAGAC CCCGCAGTTC TTCAAGGAAC TGACCGATAC GCTGCGCGAC ACCGTGGCGA AAATCCGCGA GCAGGAACGC GCGCTCACGG ACATCTGCGT GACCAAAGGG AAGATGCCCA AGGCGGAGTT CATAGAGTCG TTCAGCGGCA GTGAAACCGA CGAGGGATGG CTCGACCGGG TATGCGATCC GGCGAAACCC TATGCGGCTG CGATCAAGGC CCATGCGGAG GAAATTCGCC GGATTCAGGC CAAACTGGCT CAAATCGAGA AGGAGAACCG GCTCGACATC GCGCTCATCA AAGACATTCA TCGCCGAGTG TCCGCGGGGG AGAACCAGGC ACGCCTGGCC AAACGCGAAA TGATCGAAGC GAACCTTCGC CTCGTCATCT CCATCGCCAA GAAATACACC AACCGGGGAC TGCAGTTCCT GGACCTGATC CAGGAAGGCA ACATCGGCCT GATGAAGGCG GTGGACAAGT TCGAGTACCG GCGCGGCTAC AAGTTTTCGA CTTACGCAAC CTGGTGGATC CGCCAGGCCA TCACACGGTC CATCGCCGAC CAGGCGCGCA CGATCCGTAT TCCGGTACAC ATGATCGAGA CGATCAACAA GCTCAACCGC ATTTCGCGGC AAATGCTGCA GGAAATGGGG CGCGAACCGA CGCCAGATGA ACTCGCCGCA CGCATGGACA TGCCGGAAGA CAAGGTGCGC AAGGTGATGA AAATCGCCAA GGAACCCATT TCCATGGAGA CCCCCATCGG CGACGACGAC GATTCGCACC TGGGGGACTT CATCGAGGAC TCCCGCGTCC TGTCACCGGT CGAGCATGCC ACCGTGGCCA GCCTGCGCGA AACCACCCAA CAGGTGCTTG CCGGACTGAC CGCCCGGGAG GCGAAGGTAC TCCGGATGCG TTTTGGCATC GACATGAACA CCGACCACAC GCTGGAAGAG GTCGGAAAGC AGTTTGACGT GACGCGTGAA CGCATCCGCC AGATTGAAGC CAAAGCCCTG CGCAAATTGC GCCACCCGTC ACGGTCCGAA CAGCTGCGCA GCTTTCTGGA CATCGAATGA
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Protein sequence | MTPEQQQHQL KELIAKGKMQ GYLTFSEVND HLPSDIVDPE QMEDIICMIN DMGIEVHEDV PDNEDLIQDT AVVAESDEDE AAEVAAALAS SVDTELGRTT DPVRMYMREM GTVELLTREG ELSIAKRIEE GLNIAANELV RFPAAMEHFL KAFETVDNGE LRLSDLISDF FDPAAADTVA TEDDAEAEII DEGDTGPDPE LVKEKLAAFR KLHKAAVTAH HKYGYGHEKT QKSFDALATA FMEFKKTPQF FKELTDTLRD TVAKIREQER ALTDICVTKG KMPKAEFIES FSGSETDEGW LDRVCDPAKP YAAAIKAHAE EIRRIQAKLA QIEKENRLDI ALIKDIHRRV SAGENQARLA KREMIEANLR LVISIAKKYT NRGLQFLDLI QEGNIGLMKA VDKFEYRRGY KFSTYATWWI RQAITRSIAD QARTIRIPVH MIETINKLNR ISRQMLQEMG REPTPDELAA RMDMPEDKVR KVMKIAKEPI SMETPIGDDD DSHLGDFIED SRVLSPVEHA TVASLRETTQ QVLAGLTARE AKVLRMRFGI DMNTDHTLEE VGKQFDVTRE RIRQIEAKAL RKLRHPSRSE QLRSFLDIE
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