Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | MCA2378 |
Symbol | rnd |
ID | 3102657 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methylococcus capsulatus str. Bath |
Kingdom | Bacteria |
Replicon accession | NC_002977 |
Strand | + |
Start bp | 2558241 |
End bp | 2559407 |
Gene Length | 1167 bp |
Protein Length | 388 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637171523 |
Product | ribonuclease D |
Protein accession | YP_114794 |
Protein GI | 53803525 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0349] Ribonuclease D |
TIGRFAM ID | [TIGR01388] ribonuclease D |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0306951 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCTGCAA CCATGCCCCC GCCCATCAAC TATATCGACT CACCCGCCGA GCTTGCGGCA TTCTGCCGGT CCATCGGTGG TTCTCCCTGG ATCGCAGTCG ATACCGAATT CATGCGTGAC AAGACTTATT ATCCGAAGTT CTGCCTGCTC CAGATTGCCA ATGGCACTCA GGCCGCCTGC ATCGATCCCC TCGCCATCGA GGATCTGCGG GAAGTCGAGT GTCTGCTGTT CAATCGGGCG ATCACCAAGG TGTTTCATGC CGCGAGACAG GATCTGGAGA TTTTCTTCCA CCGATTCCGG GCCGTCCCAG CGCCGATATT CGACACCCAA CTGGCAGCCC CCCTGGTCGG CCATCCCGAG CAAGTTGGCT ATGCCAGCCT CGTATCGGCC ATGCTTGGAG TGACTGTCGA CAAGGAGCAC ACCCGCACCG ATTGGAGCCA GCGTCCTCTC TCGGCCGCCC AGAAGGAATA CGCGGCCAAC GACGTGATCC ACCTCGCGGC CCTGTATCCG AGGATGCGGG AACAACTGGA ACGGCTGGGA CGCTATGCCT GGCTGGTGGA CGAGTTCGCG GCGCTGGAGG AGCCAGACCT CTACGTAAAC CGTCCGGAGG ACGCGTGGCA GCGCATCGGC GGGCTGGACC GCCTGAAACC CGAGCAGTTC GCGTTGGCAG TCCGCCTCGC CGCCTGGCGG GAGAACACCG CCCAGCAGAA CGATCTGCCG CGCAACTGGA TACTTCGCGA CGAGGCCCTG CTGGAGATCG CGCTGAGAAG ACCCCGTAAC CGGGATGCTC TGCAAGCTCT GAGAGGAATC GATTCGCGCA TGGTACAGCG ATACGGCGAT GCGATGATCG CCCTCGTACA GGACGCCGGG AGTGGCCAGG CCGTGCCGCC ACAACCCCGC CGGGGTCAGC GCCGCAGCGC TCAGACCGAG GCCATCCTCG ATGCGATGTC GGCCCTCGTC CGCCTGCGCT GCATCGAGCA CACCATCAAC CCCGCCGTCG TGGCCAGCCG CAAGGATCTC GAAGAGCTGC TGGAATCGCC CGACGGCGCC AAAGTCCTGC ACGGATGGCG GCGCGCCCTG GTGGGAAATG ACCTGCGAGC TTTTCTGGCG GGGAAGGCGA TGCTGCGCAC GAAGGGCGGC CGACTCACAT TCGACGACTG TGAATAA
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Protein sequence | MPATMPPPIN YIDSPAELAA FCRSIGGSPW IAVDTEFMRD KTYYPKFCLL QIANGTQAAC IDPLAIEDLR EVECLLFNRA ITKVFHAARQ DLEIFFHRFR AVPAPIFDTQ LAAPLVGHPE QVGYASLVSA MLGVTVDKEH TRTDWSQRPL SAAQKEYAAN DVIHLAALYP RMREQLERLG RYAWLVDEFA ALEEPDLYVN RPEDAWQRIG GLDRLKPEQF ALAVRLAAWR ENTAQQNDLP RNWILRDEAL LEIALRRPRN RDALQALRGI DSRMVQRYGD AMIALVQDAG SGQAVPPQPR RGQRRSAQTE AILDAMSALV RLRCIEHTIN PAVVASRKDL EELLESPDGA KVLHGWRRAL VGNDLRAFLA GKAMLRTKGG RLTFDDCE
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