| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MCA2189 |
|---|
| Symbol | |
|---|
| ID | 3102295 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylococcus capsulatus str. Bath |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002977 |
|---|
| Strand | + |
|---|
| Start bp | 2361459 |
|---|
| End bp | 2363261 |
|---|
| Gene Length | 1803 bp |
|---|
| Protein Length | 600 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637171337 |
|---|
| Product | cytochrome c family protein |
|---|
| Protein accession | YP_114611 |
|---|
| Protein GI | 53803528 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01053] zinc finger domain, LSD1 subclass |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTTCATG CTCCACCGGA TCGTGAAATT CAGACGGGGA TGCCGACAGG CGCGTTGCAC
CGGGCACCTC TCCGGCGGAA GCCTAAGGAT CAAAAGTTAT GCGCTCGTGA CGATCCCTTG
ACGGTTCGGT GGCGGCTCCC GAACGGCGGC GATGTTCCGG GCCCGCGCCT GCCGGCGACG
GCCAGCCGCT GGAACGCATC CTGCTTGGGC GGCTTCATGG TCATGAGAGC TTTCCTCCCC
GCCTTTTTGC TCGCCGTCCT GACGGGAACG GCATCGGCCT TGTTGCCGTC GCCGGCAGCC
GCGAACACCC TCAGTTCGCT GGTCATGCCC GGCGAGCTGG TCTCGGCGCA TGCCAAGTAC
GAACGACAGT GCCAGAAGTG CCACGATCAG CCCGCACAAA CCGTTTCCAA TGCCTCATGC
CTGGCCTGCC ACAAGGAGCA GGCCGCGGAC ATCGAGGCTG GCACGGGATT CCACGGACGG
CTGAAAAACA TGGAAGAGAG GAAATGCAAA GACTGCCATG GTGAGCACAA GGGACGGCGC
TTCGACATCA TGGGGCTGGA CAAGGAAACC TTCGACCACC GGAACACCGA TTTCCTGCTG
AAAGGCGAAC ACCTGAAGGT CGAGTGCGCG CGCTGCCATG GGAGCGGCAA CAAATACCGC
GATGCCTCGC ACCAATGCTC CGTCTGCCAC AAGGACGACG AGCCTCACGA AGGCCGGCTG
GGCGACAAGT GCACCGACTG CCACAGCGAA GCCGGCTGGA GAGAGCTGAA GTTCGACCAT
GCGAAGACAC GGTTCCCCCT GACGGCCAGC CACAAAGACG TCGCCTGCGG CAACTGCCAT
CCCGACCGTC GCTTCAAGGA GACAGCCAGG AACTGTTACG CCTGCCATGG AATCAACGAC
ATCCATGCCG GCCACATGGG CCGACAGTGC GACAAGTGCC ATGAAACGAC GAAATGGACA
CGACCGAAGT TCGACCACCG GCGTGATACC AGCTTTCCGT TGACGGGCAA ACACGACAAG
GTTTCCTGCG AAAGCTGCCA CAAGGCCGAT CCATTCCGGG ACAAGCCGGC GACGGCATGC
GTGAGCTGCC ACGAAAAAGA CGACGAGCAC GAAGGCCGAC GCGGCCGGCG CTGTGACGAC
TGCCACACCC CGCTGGGCTG GGCGAAGACC ACGTTCGATC ACGCCCAGAC GCGGTTCCCG
CTGCGCAACA GCCACGCCAG CGTCACCTGC GGCAGCTGCC ACAAAGGCGC GATGTTCGAG
GACAAACTCA GCCTCAACTG CGTCTCGTGC CACGAGAAAA ACGATCCCCA CAAGAATCAG
GAAGGGGATG CCTGCGAAAA ATGCCATACA GACCGGGGGT GGCGCGTCGG CGTCGCCTTC
AGCCACGACC TGACCCGATT CCCGCTCACC GGTCTGCACA CCATCACGCC CTGCGCCGAG
TGCCACCTGG GCGCGAGCTT CCAGGACGCG GAGACCCAAT GCGTATCGTG CCACCGGAAG
GACGATCCAC ATGGCGAGGC CCTGGGCCGC AACTGCGAGC GCTGCCACAC GCCGAACGGC
TGGCGTCTCT GGAATTTCGA CCACGGCAAG GAAACCGGCT TTCCGCTCGA AGGCAAGCAC
GAAAGGCTGG TCTGCACGGG TTGCCACAAA CGTCCGGCGG CTGCCGACGG CCCAATCGCG
CTATCCGCCG ATTGCCATGG CTGTCACGCA AAGGACGAAC CGCACCGCGG CGCCTACGGC
AGGGAATGCG GCCGCTGCCA TACGCCGCAA GGGTTCAACC AACTGAAGCA GCGTCTCAGA
TGA
|
|---|
| Protein sequence | MLHAPPDREI QTGMPTGALH RAPLRRKPKD QKLCARDDPL TVRWRLPNGG DVPGPRLPAT
ASRWNASCLG GFMVMRAFLP AFLLAVLTGT ASALLPSPAA ANTLSSLVMP GELVSAHAKY
ERQCQKCHDQ PAQTVSNASC LACHKEQAAD IEAGTGFHGR LKNMEERKCK DCHGEHKGRR
FDIMGLDKET FDHRNTDFLL KGEHLKVECA RCHGSGNKYR DASHQCSVCH KDDEPHEGRL
GDKCTDCHSE AGWRELKFDH AKTRFPLTAS HKDVACGNCH PDRRFKETAR NCYACHGIND
IHAGHMGRQC DKCHETTKWT RPKFDHRRDT SFPLTGKHDK VSCESCHKAD PFRDKPATAC
VSCHEKDDEH EGRRGRRCDD CHTPLGWAKT TFDHAQTRFP LRNSHASVTC GSCHKGAMFE
DKLSLNCVSC HEKNDPHKNQ EGDACEKCHT DRGWRVGVAF SHDLTRFPLT GLHTITPCAE
CHLGASFQDA ETQCVSCHRK DDPHGEALGR NCERCHTPNG WRLWNFDHGK ETGFPLEGKH
ERLVCTGCHK RPAAADGPIA LSADCHGCHA KDEPHRGAYG RECGRCHTPQ GFNQLKQRLR
|
|---|
| |