| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MCA2008 |
|---|
| Symbol | |
|---|
| ID | 3103646 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylococcus capsulatus str. Bath |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002977 |
|---|
| Strand | - |
|---|
| Start bp | 2154890 |
|---|
| End bp | 2155534 |
|---|
| Gene Length | 645 bp |
|---|
| Protein Length | 214 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637171163 |
|---|
| Product | transglycosylase SLT domain-containing protein |
|---|
| Protein accession | YP_114440 |
|---|
| Protein GI | 53803710 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGGATGA AACGACGTCT TTGGATCGCC TTGCTGCTGG GGGGGCTGCC GGCGGCGCAG
GTCTCGGCGG ATGTCTACAA GTTCGTCGAC AAGAAGGGTC ATGTCTATTA CACCGATCGT
CCCCCGCATA GCGGCTACCG GCTGATCGCC ACCACCAGGG TGTCGGGCAG GCTGGGGTCA
CCGGCCCTCG CGTACCAGGA GGCGTCATCG GGCCGGGCTT CGGCTCCGGT CGCCTTCAAG
TCCGGGACAT TGGCGCGCAA CCGCGAAATG CTGGCGCCGC TGATCGCCGA AGCGGCCGAA
CGCTACGACC TCGATCCCCT GCTGCTGCAC GCGATGATCC AGGCGGAGTC GGCATACAAC
TCGGAGGCGG TTTCGGGTAA GGGGGCTGTG GGCTTGATGC AACTGATGCC GGACACTGCA
GCACGCTATG GCGTGCGGGA CCGGACCGAC CCGGTGGAGA ACGTCTACGG CGGGGCCCGC
TATCTGCGCG ACCTCATTGG CATGTTTAAC GATGTCAGCC TGGCGGTCGC CGCCTACAAT
GCCGGCGAGA ACAACATCAT CAAATACGGC AACCGGGTGC CTCCTTTTCC CGAAACCCAG
GATTATCTGA ACCGAGTGAT CGAATACTAC AATCGCCTGA ACTGA
|
|---|
| Protein sequence | MRMKRRLWIA LLLGGLPAAQ VSADVYKFVD KKGHVYYTDR PPHSGYRLIA TTRVSGRLGS
PALAYQEASS GRASAPVAFK SGTLARNREM LAPLIAEAAE RYDLDPLLLH AMIQAESAYN
SEAVSGKGAV GLMQLMPDTA ARYGVRDRTD PVENVYGGAR YLRDLIGMFN DVSLAVAAYN
AGENNIIKYG NRVPPFPETQ DYLNRVIEYY NRLN
|
|---|
| |