| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MCA1864 |
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| Symbol | mfd |
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| ID | 3102205 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylococcus capsulatus str. Bath |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002977 |
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| Strand | + |
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| Start bp | 2002683 |
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| End bp | 2006126 |
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| Gene Length | 3444 bp |
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| Protein Length | 1147 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637171023 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_114301 |
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| Protein GI | 53803839 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0555269 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGGCCACGC CTTTGACCCC CCCTTTGCCT ACCACCCGCC GCCAGGCCCT GTGCTGGAGC
GGGCTGCACG GTTGCAGCGA TTCCCTCGCG ATCGCCTCGG CGATCGGTGC CTCACCCGGC
TTGTTCGTCG TCGTCACCGC CGATGCCCAG AGCGCTTTAC GCATCGAACA GGAGGTGAAG
ACATTTCTCG GTGGGGATGC GGCGCTCCTC CCATTCCCGG ACTGGGAAAT CCTCCCCTAC
GACGTGTTTT CCCCGCTGCC TGAAATCACG TCGCAGCGGC TGCGGACCTT TTATGAGCTA
TCCCGCATCC AACATGGCCT GCTCATCACC CCTGTATCCA CGCTGATGCA TCGGGTAGCT
CCGCGGACCC ACACCCTGGC CAATACGTTT TCCATTCGCA CCGGCAGCGC TGTGAATATC
GATCAGACCC GGCAGACACT CGAAAGCGTA GGCTACCAGT GCGTCTCGCA GGTATACCAG
CATGGCGAAT TCGCGATCCG GGGCTCGATA CTCGACCTTT ATCCCATGGG GAGCGAGACA
CCTTATCGCA TCGAGCTGTT CGACGACGAG GTGGAAACGA TCCGTACCTT CGATCCGGAA
AGCCAGCGCT CGATCGAAAA AGTGGAAGAC ATCGAGCTTT TCCCTGCCCG CGAATTCCCT
TTCGACGAGG CTGCCATTAA AAAGTTCCGG CAGAATTTCC GGGTCGAATT CCCGGATGCG
GTGAGTCGCA GCGTCCTGTA TCAGGATGTC AGCAAGGGAA TCGCCGTCGG GGGGATCGAA
TACTACATAC CCCTGTTCGT GGAACGGATG GATACGTTGT TCGATTACCT GCCGGGCGAT
GCGACCCTGA TATTGCACGG CGATGTCGAA CAGGCGGCCG CCGCTTACTA CGCCGAGGCC
GCCAGCCGTC ATGACCAGCG CCGCCACAAC CTGGACCGTC CGCCCCTGCC ACCGGCCCGC
CTGTTTCTGG AACCCGAAGC GCTGACATCC AGCCTCGCAT CCTTCAGCCG CGTCATGATC
CCGGCTGCGG ACGCCGCCCC CGCCGCCGCG GTGAAATTCG ACTGCGCGCC GCCGCCGGCA
CTGCATCCGG AAACCAAGAC CCAGCCTCCC TACGAACCGC TGCAATGCTT CATCGGGGAG
TTTGCCGGAA AAATCCTGCT GGTCGCGGAA TCCGCGGGCC ACCGCGAGAC CCTCGCGGCG
AACCTCACCA AGTACCGGAT CCGTCCACGG ATCGTGGAGA GCTGGGCGGA CTTCCTTGCG
GTGCCGGACC CGCTGTGCCT GATGGTCGCC GCCCTCGACC ATGGCCTGGT CATTTCCGAT
CCTCCCCTGG CGATCGTGAC CGAAGCCCAG CTCTCGGGCG ACAAGGCCCA GCAACGCAGG
CGCCGGCAAC GCACGCCATC CAAGGATTTC GGCCAATTCC TACGGAGCCT GGAAGAACTG
GAGATCGGCG CGCCGGTGGT GCATCGCGAA CACGGCGTTG GCCGCTATCT CGGCCTGCAG
CGGATCGATA CCGGCGGCGT GGAGTCGGAA TTCCTGACGA TCCGCTACGC CAACGACGAC
AAGCTCTACG TTCCCGTTTC GGCCCTCGGC ATGGTCAGCC GCTACGCCGG CGCCGACCCG
GAACACGCGC CGCTGCACCG CCTGGGCAGC GAACAATGGG CCAAGGCGCG CCGCAAGGCA
CTGGAACAGG TCCGCGACGT CGCCGCCGAA CTGCTGGACA TTCATGCCAG GCGAGCCGCG
GCGAGCGGGC GGAGTTTCGC CACGCTGACC GAAGAATACC TGAGCTTCGC CGCTCAGTTC
CCGTTCGAGG AAACACCCGA CCAGGAAACC GCGATCCAGG ACGTCATCCG CGACCTCGCC
GCCCCCCGTC CGATGGACCG GGTGGTCTGC GGCGACGTCG GCTTCGGCAA AACGGAAGTC
GCGATGCGGG CCGCCTTCAT CGCCGCCCAG AACGGCCGCC AGGTCGCAGT GCTGGTACCG
ACCACCCTGC TGGCCCAGCA GCACTACAAG AACTTCTGTG ACCGCTTCGC CGACTGGCCG
ATGCGGATCG ACGTGCTGTC GCGCTTCGTC TCCAAGAAAG ACCAAGCCCA GACCATCGCG
GACATCGGCG ACGGCAAGGT GGACATCGTC ATAGGCACCC ACCGGCTACT GCAGAAGGAC
ATCCGCTTCA AGGACTTGGG ACTGGTCATC ATCGACGAGG AGCACCGCTT CGGGGTCGCG
CACAAGGAGC ATTTCAAAAA GCTGCGCAGC GAAGTGGATT TCCTGGCGCT GACCGCCACC
CCCATCCCCC GCACCCTGGA CATGGCCCTG AGCGGCCTGC GCGAGATTTC CGTCATCGCC
ACTCCGCCGC CCCACCGGCA CGTCATCCGC ACTTTCGTCA CCGAATGGGA CGACACGCTG
GTGCAGGAAG CCATCACGCG CGAGATCAAG CGCGGCGGCC AGGTCTATTT CGTGCACAAC
AAGATCGAGA CTCAGCCCAG ACTGGCGGAG CGGCTGGAAA AGCTGGTGCC CGGTATCCGC
ACCCGCATCG CCCACGGCCA GATGCCGGAG CGGGAATTGG AAAACATCAT GCTGGACTTC
TACCATCAGC GCTTCAACGT GCTGCTCTGC ACCACCATCG TGGAAAGTGG CATCGACGTG
CCCAGTGCCA ACACGATACT GATCGACCGC GCGGACACCT TCGGTCTCGC CCAGCTCCAC
CAGCTGCGGG GACGGGTCGG ACGCTCGCAT CACCGCGCCT ATGCCTATCT GCTGGTACCG
CCGAAGAAGG CCATGACCGC CGACGCCGTG AAGCGCCTGG AGGCCATCGA GGCGGCAGGC
GAACTCGGCG CCGGTTTCCT GCTGTCCTCT CAGGATCTGG AGATCCGCGG TGCCGGCGAG
CTGCTCGGCG AGGAGCAGAG CGGCCAGATC CAGGAAATCG GCTTCACCTT ATATACCGAA
CTGCTGGAAA AGGCCGTCAA CGCGCTGAAA TCCGGCAAAC AGCCAGAACT GGAAACCGAT
CACCTCGCCG GTACCGAAGT CGACCTGCAA TGCGCGGCGC TGATCCCGGA GGAATATCTC
CCCGACGTGC ACACCCGCCT GGTGCTGTAC AAGCGCATCG CCAACGCCCG CAGCGACGAC
GAGCTGCGCG AGCTGCAGAT CGAGATGATC GACCGCTTCG GCCTGCTGCC GGAGGCGACC
AAGCAGCTGT TCGCGGTCAG CGCGCTGAAG AACGAGGCCG CCAAGCTGGG CATCGCCAAG
ATCGAAGCCG GGGCAACCGG CGGACGGTTG ATATTCGAAG CCCACCCGGC CATCGACCCG
GCCGCGATCA TCCTGCTGAT CCAGAAGGAG GCCGCCACCT ACAAGCTGGA CGGCCCGGAC
AAACTGCGGT TCATCGCCAA GCTCCCCACC CCGGCGGAGC GGGTCCGGTT CGTCGAGGCG
CTGCTGGACC GGCTGAAGGC ATGA
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| Protein sequence | MATPLTPPLP TTRRQALCWS GLHGCSDSLA IASAIGASPG LFVVVTADAQ SALRIEQEVK
TFLGGDAALL PFPDWEILPY DVFSPLPEIT SQRLRTFYEL SRIQHGLLIT PVSTLMHRVA
PRTHTLANTF SIRTGSAVNI DQTRQTLESV GYQCVSQVYQ HGEFAIRGSI LDLYPMGSET
PYRIELFDDE VETIRTFDPE SQRSIEKVED IELFPAREFP FDEAAIKKFR QNFRVEFPDA
VSRSVLYQDV SKGIAVGGIE YYIPLFVERM DTLFDYLPGD ATLILHGDVE QAAAAYYAEA
ASRHDQRRHN LDRPPLPPAR LFLEPEALTS SLASFSRVMI PAADAAPAAA VKFDCAPPPA
LHPETKTQPP YEPLQCFIGE FAGKILLVAE SAGHRETLAA NLTKYRIRPR IVESWADFLA
VPDPLCLMVA ALDHGLVISD PPLAIVTEAQ LSGDKAQQRR RRQRTPSKDF GQFLRSLEEL
EIGAPVVHRE HGVGRYLGLQ RIDTGGVESE FLTIRYANDD KLYVPVSALG MVSRYAGADP
EHAPLHRLGS EQWAKARRKA LEQVRDVAAE LLDIHARRAA ASGRSFATLT EEYLSFAAQF
PFEETPDQET AIQDVIRDLA APRPMDRVVC GDVGFGKTEV AMRAAFIAAQ NGRQVAVLVP
TTLLAQQHYK NFCDRFADWP MRIDVLSRFV SKKDQAQTIA DIGDGKVDIV IGTHRLLQKD
IRFKDLGLVI IDEEHRFGVA HKEHFKKLRS EVDFLALTAT PIPRTLDMAL SGLREISVIA
TPPPHRHVIR TFVTEWDDTL VQEAITREIK RGGQVYFVHN KIETQPRLAE RLEKLVPGIR
TRIAHGQMPE RELENIMLDF YHQRFNVLLC TTIVESGIDV PSANTILIDR ADTFGLAQLH
QLRGRVGRSH HRAYAYLLVP PKKAMTADAV KRLEAIEAAG ELGAGFLLSS QDLEIRGAGE
LLGEEQSGQI QEIGFTLYTE LLEKAVNALK SGKQPELETD HLAGTEVDLQ CAALIPEEYL
PDVHTRLVLY KRIANARSDD ELRELQIEMI DRFGLLPEAT KQLFAVSALK NEAAKLGIAK
IEAGATGGRL IFEAHPAIDP AAIILLIQKE AATYKLDGPD KLRFIAKLPT PAERVRFVEA
LLDRLKA
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