| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MCA1481 |
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| Symbol | rne |
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| ID | 3103735 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylococcus capsulatus str. Bath |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002977 |
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| Strand | + |
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| Start bp | 1573769 |
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| End bp | 1576426 |
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| Gene Length | 2658 bp |
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| Protein Length | 885 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637170656 |
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| Product | ribonuclease E |
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| Protein accession | YP_113938 |
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| Protein GI | 53804451 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1530] Ribonucleases G and E |
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| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00665357 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAGAA TGTTGATCAA CGCCACGCAG CCCGAGGAAT TGCGGGTCGC GCTGGTCGAT
GGACAAAAGC TTTATGACTT CGACATAGAA ATCCCCGCGA GGGAACAAAA AAAGGCCAAT
ATCTACAAAG GACTGATTAC CCGCGTCGAG CCCAGCCTCG AGGCGGCGTT CGTGAACTTC
GGCGCGGAGC GGCACGGCTT CCTGCCGTTC AAGGAAATCC TGCCGAAATA TCTCGGCGCC
GGCGGCGAAG AGTCCGTCTC CCGGCGGGAA ATCAAAGACG TTCTCAAGGA AGGCCAGGAA
GTCGTCGTTC AGGTCGAAAA AGAGGAGCGC GGCACCAAGG GCGCCGCCCT GACCACCTAC
ATCAGTCTGG CCGGCAGCTA CCTCGTGCTC ATGCCGAACA ACCCCAAAGC GGGCGGTATC
TCCCGCCGCA TCGAGGGCGA CGTCCGGTCC GACATGAAGG AGACACTGAG TCAGCTCCAT
GTTCCCGAAG ACATGGGCGT CATCATCCGC ACGGCGGGCG GTGGCAAGAC GGTCGAAGAA
CTGCAGTGGG ACCTCAATTA TCTGTTGCAG CTGTGGGAAG CGATCGAACG CTCGACGCGG
GAAAAACCGG CGCCGTTCCT GATTTTCCAG GAAAGCAACG TCATCATCCG AGCTCTGCGC
GACCATCTGC GGGGTGACAT CGACGAAATC CTGGTCGACA ACCCTTCGAC TTTCAGGCTG
GTGCACAGCT TCCTGCAACA GGTCATGCCC CAGTTCATCA ACAAGGCGCG CCTGTATCAG
GACAACGTAC CCCTGTTCAG CCGTTACCAG ATCGAAAGCC AGATCGAAAC GGCCTATGCC
CGCGAAGTGC CGCTGCCCTC CGGCGGCGCC ATCGTCATCG ACCATACCGA GGCGCTGACG
ACCATCGATA TCAATTCGGC GCGGGCCACC AAGGGCGGCG ATATCGAAGA AACCGCGCTG
AACACCAATC TCGAGGCCGC CGACGAGATC GCCCGCCAGT TGCGCCTGCG CGACCTGGGG
GGATTGTTCG TGATCGATTT CATCGACATG ATGGCGGCCC GCAACCAGCG TGCGGTGGAG
AACCGCCTGC GTGAGGCAGT GCGCCTCGAC CGGGCGCGCA TCCAGCTCGG TCGGATTTCC
CGTTTCGGCC TCATGGAAAT GTCACGCCAG CGCCTTAGAC CTTCGCTCAC GGAGACGGCG
CTCCTGACCT GCCCGCGCTG CAAAGGCCAG GGGACGATAC GCAGCGTCGA ATCGCTGGCC
CTGTCCATCC TCCGCGTCCT GGAGGAGGAA ACGATGAAAA AGAACACCGA CCGGATCATC
GCCCAGCTGC CAGTCGAGTC GGCCACCTAT CTGCTGAACG AGAAACGCGC GGCGATCCAG
CAGATCGAGG TCCGGCACAA TGTGGCCATC ACCATCATCC CCAATCCGCA CCTCGAAACT
CCCAACTATG ATATCCAGCG GATCCGGAGT GGCGGAGCCG GTGGGGAAGA AGAGATACGC
AAGAGTAGTT ACCAGCTCAT TGCCGAGAAA TCGCCCGAGA CTCCCAAGCC GACACGAACG
CCCAGTGCCG CCGCGGAGGC TCCGGCGGTG CGGGAATTCA TTCCCACCGC CCCGCAGCCG
GGCGGCGGCG ACCAGCGGGC CCAAGCTCAG CCAGGCCAGC CTGGCGGCGG GCTGATCAAA
CGCTTCCTCA ACATCCTGAC CGGTCAACGC ATCGAGGACC AGCCTCCCTC TCAGGAGGCG
TCTCAGCCGT CCGCCGGACT GCCGTTACCC GTACCTTTCG TACAGACGGG CAAGACGGCC
GGCGCGCAGG CGGAAACGGG AGCCCCCCCG ACCGACGACA GCGATCACTC CGGAAGCCAG
CGGCGCCGCG ACCACCGGGA CGGCAGCAGG CGGGGGGGCA ACCGCCGGAA GCATCCCGCC
CAGCGGGACG AAACGACTGA CCGACGCCAC GGCGGGCCGA CTTCGGACAC CGAAGCCATC
CAGGCTTCCG GAACCGAGGA ACAGCCCCAG ACGTCGACTG ACCAAGAGGA GCGGCCCAAA
TCCGAGGGGG GCCGCGGTCG CCGCCGGGAC GGCAGAGGCC AGCGCCGGCG GGCGTCGGTT
CAGCCGATCG TGGAAGCGCC GACGGAGGGC ATCGCGGATG AGACGGTCGT CTCTGAAATT
CCTCCAGCGG GCGCGGACTT GAGCGACCCT GTGCCTGCCG CCGATTCCGG CGAAACTCCC
GACCAGGGAG ATGCCGTCGG CCACGAGCCG GCCGAAGGAG ACAGGGTGGA TGCGGAACTC
CGCCTGCGGA CTCCACGGTC GCGGCGGGGC GGCGTGAGAC GGCGTGGCCG CGGCAGGCGG
GACCGTCGCC CGGCAGCACC GGGTGAGCAG GGAAGTGAAG CTCTCGAACC GGTCGGCATC
GATTGGGGCG ACGACACCGC CAGAGGCCGC GGCGTGGAAG CCGAAGCCAA TCCGCCCGGC
CCGGCGGAAA TCGACGATCA CCGGCGCGAG CCGTATTCAT CCCCGGCGGA ACGGAAAGAG
ACGGCGGAAT CCGATGAATA CCGTGCGCCG GGTCTGCCGC CCAGAGCATG GCAGTCCCCC
GCAGCGGACC TCGCCGCCCG GGACGAGCAC CCCGATTCTC CGCCGCCGGT CGAACGCGGC
GCCGGCTCTT CGGATTGA
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| Protein sequence | MKRMLINATQ PEELRVALVD GQKLYDFDIE IPAREQKKAN IYKGLITRVE PSLEAAFVNF
GAERHGFLPF KEILPKYLGA GGEESVSRRE IKDVLKEGQE VVVQVEKEER GTKGAALTTY
ISLAGSYLVL MPNNPKAGGI SRRIEGDVRS DMKETLSQLH VPEDMGVIIR TAGGGKTVEE
LQWDLNYLLQ LWEAIERSTR EKPAPFLIFQ ESNVIIRALR DHLRGDIDEI LVDNPSTFRL
VHSFLQQVMP QFINKARLYQ DNVPLFSRYQ IESQIETAYA REVPLPSGGA IVIDHTEALT
TIDINSARAT KGGDIEETAL NTNLEAADEI ARQLRLRDLG GLFVIDFIDM MAARNQRAVE
NRLREAVRLD RARIQLGRIS RFGLMEMSRQ RLRPSLTETA LLTCPRCKGQ GTIRSVESLA
LSILRVLEEE TMKKNTDRII AQLPVESATY LLNEKRAAIQ QIEVRHNVAI TIIPNPHLET
PNYDIQRIRS GGAGGEEEIR KSSYQLIAEK SPETPKPTRT PSAAAEAPAV REFIPTAPQP
GGGDQRAQAQ PGQPGGGLIK RFLNILTGQR IEDQPPSQEA SQPSAGLPLP VPFVQTGKTA
GAQAETGAPP TDDSDHSGSQ RRRDHRDGSR RGGNRRKHPA QRDETTDRRH GGPTSDTEAI
QASGTEEQPQ TSTDQEERPK SEGGRGRRRD GRGQRRRASV QPIVEAPTEG IADETVVSEI
PPAGADLSDP VPAADSGETP DQGDAVGHEP AEGDRVDAEL RLRTPRSRRG GVRRRGRGRR
DRRPAAPGEQ GSEALEPVGI DWGDDTARGR GVEAEANPPG PAEIDDHRRE PYSSPAERKE
TAESDEYRAP GLPPRAWQSP AADLAARDEH PDSPPPVERG AGSSD
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