Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | MCA1479 |
Symbol | rluC |
ID | 3105000 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methylococcus capsulatus str. Bath |
Kingdom | Bacteria |
Replicon accession | NC_002977 |
Strand | - |
Start bp | 1572164 |
End bp | 1573114 |
Gene Length | 951 bp |
Protein Length | 316 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637170654 |
Product | ribosomal large subunit pseudouridine synthase C |
Protein accession | YP_113936 |
Protein GI | 53804453 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0352781 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGATGAAAC CTCTCCCGCA AGACCCGAAC CGGCCTCGCC TGATAGAAGT CGATGCCGAG ACAGCCGGCC AGCGCATCGA CAATTTTCTG TTTTCGCGCC TGAAGGGCGT CCCCAAGAGC CATGTGTACC GTATCCTCCG CACCGGCCAG GTGCGGATCA ACGGCGGCCG CAGCAAGGCG CAGCAGCGGC TGAACGAAGG TGACGTCGTT CGGATCCCGC CCTTGCGCCT CGCCGAGGCG CCGGAGGCGG GGATCCCGAC GCCATGGCTG GAAAACCGGA TCCTCCACGA AGACGAGGAC CTTCTGGTCG TCAACAAACC TGCGGGCATG GCAGTGCATG GCGGCAGCGG CCTCCGTTTC GGGGTGATCG AAGGTCTGCG GGCGGCGCGG GAGGATGCGC GGTTCCTCGA ACTGGTGCAC CGGCTGGACC GCGACACGTC GGGCTGTCTG CTGATTGCCA AGCGCCGTTC CGCGCTGCGC CAGTTGCACG AGCAGTTCCG GGGAGAGGGG GTGGACAAGA CCTATCTGGC TCTGTTCAGC GGCGTGTGGG CGCGCCGGCG GCAAGTGGTG GACGCCCCCT TGCTCAAGAA CGTCTTGCAG AGCGGCGAGC GGATGGTGAA GATTTCGTCC GAGGGGAAGG CGGCGATCAC CGAATTCCGC CGCTTGGAAC CACTTTCCGG GGCGACGCTG GTGGAAGCCA GACCGGTGAC CGGCCGTACC CATCAGATCC GGGTGCACGC CCGGTCGCTG GGTCATCCGC TGGCCGGTGA CGAACGTTAC GGGGATCCCT CGCTCAACCA GGACTTCCGC CAGCGCGGTT TGAAGCGCAT GTTTCTGCAT GCCGCGACGC TCGCGTTCAC CCATCCCCGA AACGGGCGCG AAATCCGCGT CGAAGCGCCC CTGGAACCGG ACCTTCAAGA CTTCCTGTCG GCTGTCAGGC CTCGAGGCTG A
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Protein sequence | MMKPLPQDPN RPRLIEVDAE TAGQRIDNFL FSRLKGVPKS HVYRILRTGQ VRINGGRSKA QQRLNEGDVV RIPPLRLAEA PEAGIPTPWL ENRILHEDED LLVVNKPAGM AVHGGSGLRF GVIEGLRAAR EDARFLELVH RLDRDTSGCL LIAKRRSALR QLHEQFRGEG VDKTYLALFS GVWARRRQVV DAPLLKNVLQ SGERMVKISS EGKAAITEFR RLEPLSGATL VEARPVTGRT HQIRVHARSL GHPLAGDERY GDPSLNQDFR QRGLKRMFLH AATLAFTHPR NGREIRVEAP LEPDLQDFLS AVRPRG
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