| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MCA0741 |
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| Symbol | rpoN |
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| ID | 3103530 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylococcus capsulatus str. Bath |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002977 |
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| Strand | - |
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| Start bp | 780492 |
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| End bp | 781955 |
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| Gene Length | 1464 bp |
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| Protein Length | 487 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637169945 |
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| Product | RNA polymerase factor sigma-54 |
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| Protein accession | YP_113244 |
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| Protein GI | 53805053 |
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| COG category | [K] Transcription |
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| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
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| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.111429 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAACAAT CACTGCAACT TCGGCTGGGG CAGCAACTGG CCATGACCCC CCAGCTGCAG
CAGGCCATCA AGCTGCTGCA GATGTCCACG CTCGAATTGC AACAGGAAAT CCAGCAGGCC
CTGGATTCCA ACATGATGCT GGAAATCACC GACGAGGAAG AGCCCGTCCT GAACGCTGTG
ACCGAGGAGC CGCCGCTTGC CGCTGCCGAA CCCGCCTACG CCGAGCTCCC CGATCTCGAC
ACCCAGACCA CCATCCCCGA CGAACTGCCG GTCGACTCCT CCTGGGAGGA CGTTTTCGAC
GGCATGCACA ATTACACGCC CAGCAACGCG GCAGAGCCGG AGAACGAAGA TTTCCTGGGG
CAGCGGGGCA AGGGACAAAG TCTCCAGGAT TACCTGCTCT GGCAGATGGA GCTCACCCCC
TTCACCGAGC GCGACCATGC GATCGCAACC GCCATCATCG ATGCGGTGGA CGATGACGGC
TATCTGGATG CCACCGTGGA AGAGATCACC CAGGGGCTGA GCTCGCAACT CGAAAACCTC
GAACAGGACG AAGTCCGGGC GGTTCTGCAC CGCATCCAAA ACTTCGATCC ACCCGGCATC
GCTGCGGAAA ACCCGGCCGA CTGCCTGCGC ATCCAACTGC AGCAGATGCC CGAGAACACC
CCCTACCGCG CCCAGGCCCT CGAGCTGGTC CGCCATCACG TCGACCTGCT CGCGAAGAAG
GATCTCGTCA GGCTCAAGAA AGCGCTGGAG CTCGACGACG ATGAGCTGGC CGAAGTGATC
CGTCTGGTCC GGTCCCTCGA CCCGAAACCG GGCCGCGCGG TGGAACCGGA CGACTACCAG
TACATCATCC CGGACGTCTT CGTCTATCGG CAGGGAACCG AATGGGCCGT CGCCCTCAAC
CCTGAAATCG CTCCCAGACT GCGCGTCAAC CCCTATTACA GCGGCCTGAT TCGGCGAGCG
GACAGCAGCT CCGACAACGT GACCATGCGC AATCATCTGC AGGAAGCGCG CTGGTTCATC
AAGAGCCTGC AGAGCCGCAA CGAAACCCTG CTCAAAGTGG CGCGCGCCAT CGTAGACCGC
CAGCGCGAGT TTCTCGAGAT TGGTGAAACC GCGATGAAAC CCCTGGTGCT GCGTGACATT
GCCGAAGAAG TCTCCATGCA CGAATCGACG ATTTCGCGGG TAACGACCCA GAAATACATG
CACACGCCCA ATGGCATCTA CGAATTCAAG TATTTCTTTT CGAGCCACGT GTCCACGGAT
TCCGGCGGCG AATGCTCGGC CACTGCAATC AAGGCGTTCC TCAAGGAAAT CGTGAGCAAG
GAAGACGCGA CCCGTCCCTT GAGCGACCAT GCCATCGCCG GCATGCTGAA AGACAAGGGC
ATCAACGTTG CGCGGCGAAC CATCGCCAAA TACCGTGAAG CGATGGGCAT TCCACCGTCC
AACGAAAGAA AGCAGTTGTT CTAA
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| Protein sequence | MKQSLQLRLG QQLAMTPQLQ QAIKLLQMST LELQQEIQQA LDSNMMLEIT DEEEPVLNAV
TEEPPLAAAE PAYAELPDLD TQTTIPDELP VDSSWEDVFD GMHNYTPSNA AEPENEDFLG
QRGKGQSLQD YLLWQMELTP FTERDHAIAT AIIDAVDDDG YLDATVEEIT QGLSSQLENL
EQDEVRAVLH RIQNFDPPGI AAENPADCLR IQLQQMPENT PYRAQALELV RHHVDLLAKK
DLVRLKKALE LDDDELAEVI RLVRSLDPKP GRAVEPDDYQ YIIPDVFVYR QGTEWAVALN
PEIAPRLRVN PYYSGLIRRA DSSSDNVTMR NHLQEARWFI KSLQSRNETL LKVARAIVDR
QREFLEIGET AMKPLVLRDI AEEVSMHEST ISRVTTQKYM HTPNGIYEFK YFFSSHVSTD
SGGECSATAI KAFLKEIVSK EDATRPLSDH AIAGMLKDKG INVARRTIAK YREAMGIPPS
NERKQLF
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