| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_03962 |
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| Symbol | |
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| ID | 6777817 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Alteromonas macleodii 'Deep ecotype' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011138 |
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| Strand | + |
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| Start bp | 4270217 |
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| End bp | 4270843 |
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| Gene Length | 627 bp |
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| Protein Length | 208 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 642757413 |
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| Product | general secretion pathway protein J |
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| Protein accession | YP_002128246 |
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| Protein GI | 196158757 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4795] Type II secretory pathway, component PulJ |
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| TIGRFAM ID | [TIGR01711] general secretion pathway protein J
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCAGCGCG GTTTTACGCT TATTGAAATA CTGATAGCCA TGGCCATTTT CACCCTCATC
GGCTTGGCAT CAACAGGTTT ACTTACCACG GTTATCGACA GTAACGATAT TTCAGAAGAG
CGCTTTGCAA AGCTTCAACT ATTACAGCGC GCCATGATCA CCATTGAACG AGACCTTCAA
CAAGCAGTGC CTCGCGCAGT AAGAGTTAAC GGTGAAAAAC AAGAAGTGGT AATGGCGGGC
GGCGAAACAG ACGACAGCGA TGGTGATGGC ATTGGCTTTG TGCGCGGAGG CTGGCACAAC
CCTCAGCTAA TGCTCCCAAG AAGTACCTTA CAGTACGTCG CTTACCGCTT AAAAGAGAAC
AAGCTAGAGC GTTTATACAG TAACTATGTT GACAATGTTA TTGGCTACGA GCCCAAAGTA
CGGGTGCTGC TAGAAGACGT AGAAAGTTTA AAAGTTGAGT TTCTTGCCAC CTCGAACAGC
AGTTCATTAG ATGAGGATGA CGATATCTCT TGGAGTGAGA GCTACAAGGG TTCAACACTT
CCTCGCGCCG TAGCGGTGGA GTTTGTTAGC AAGGACTTTG GCAAAATTCG CAGGGAATTC
ACCTTAACAA CGGGTGAATC ATCATGA
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| Protein sequence | MQRGFTLIEI LIAMAIFTLI GLASTGLLTT VIDSNDISEE RFAKLQLLQR AMITIERDLQ
QAVPRAVRVN GEKQEVVMAG GETDDSDGDG IGFVRGGWHN PQLMLPRSTL QYVAYRLKEN
KLERLYSNYV DNVIGYEPKV RVLLEDVESL KVEFLATSNS SSLDEDDDIS WSESYKGSTL
PRAVAVEFVS KDFGKIRREF TLTTGESS
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