| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_03882 |
|---|
| Symbol | |
|---|
| ID | 6776850 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alteromonas macleodii 'Deep ecotype' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011138 |
|---|
| Strand | - |
|---|
| Start bp | 4180318 |
|---|
| End bp | 4182108 |
|---|
| Gene Length | 1791 bp |
|---|
| Protein Length | 596 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 642757333 |
|---|
| Product | anaerobic ribonucleoside triphosphate reductase |
|---|
| Protein accession | YP_002128166 |
|---|
| Protein GI | 196158677 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG1328] Oxygen-sensitive ribonucleoside-triphosphate reductase |
|---|
| TIGRFAM ID | [TIGR02827] anaerobic ribonucleoside-triphosphate reductase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTAACAC TCGATGATAA ACATATAAAA CAAAAACTGC AGTTTATCGA TAGTTACTTA
AATGCTGAAA CAGCTGCTGA TGGCGCGAAG TTAGATGCTA ACGCCAACGT GACGCACAAA
AATATTGCTA CGCTCGAAGC TGAACTGATG AAAGACTATT TCATTCAGGT AAATCGCGCA
TTGGTGAGCA ATAAGATCGA AGAGCTATTT GGTCATGAAC TTGCTCTTGA GTACCAGCGG
CAGATCGAGG CTCATGAAAT CTATGTGCAT GATGAAACCA GCCTAAAGCC TTACTGTACT
TCCATTACCA TGTACCCATT TCTCTTAAAT GGGTTGACTG AACTTGGCGG TGAATCTAAA
GCGCCACAAC ATATAGAGTC TTTCTGCGGC AGTTTCGTAA ACTTGGTATT CGCAATTAGT
GCACAATTTG CGGGTGCCAT CGCCACAGTT GAATTCCTGA TTTACTTCGA CCATTTTGCG
CGTCGGGATT ATGGAGAAAA CTATCTCAAT ACCCATGCCA AAGAAGTCGC TAACCATCTA
CAGCATGTCG TTTATGCCCT AAACCAGCCA GCGGCTGCTC GCGGCTATCA AAGCGTGTTT
TGGAACATAT CGCTTTATGA CAAATTCTAC TTTGACTCAA TGTTTGGTGA GTTTGTGTTT
CCAGATATGA GCAAACCCGA ATGGAAGAAT ATTGAATCGT TACAAGCTTT CTTTCTGGAG
TGGTTTAATA ATGAACGTAA GCGGGCAGTA CTCACGTTCC CTGTGGTGAC AGCGGCAATG
CTGACAAAGA ACGGGGCAGT CAAAGATGTC AATTTCGCAG CGACATGCGC TAAAGCGATG
AGTGAAGGTA ACTCATTTTT TGTTTACCAA TCTGAGAGTG CCGATTCATT AGCCTCTTGT
TGCCGATTGC GCAACGAGAT CACCGACAAT ACGTTTTCAT ATAGCTTAGG TGCAGGCGGC
GTATCGACAG GCTCCATTAA TGTCATCACC ATAAATATGA ACCGATTAAT TCAGGATGGC
AGAGACTTAA GCAGTGAAGT TCAGAAGATA CACAAGTATC AAGTCGCTTA TCGTCGACTC
ATCGAGGAGT ATAAAGCAGC TGGAGCACTA CCTGTTTATG ACGCAGGCTT CATTAGCCTG
GATAAGCAAT TTTTAACGCT GGGAGTCAAC GGACTAGCAG AAGCTGCTGA GTTTTTAGGT
ATTGAAGTCG GTAATAATCG GAAATACAAA GATTTTGTTA GGGCGCAATT GCAAGTCATT
TACGAACAAA ACAGGACTGC ATCTAAGCAT TTTAAATGTC AGTTCAACAC AGAGTTTGTA
CCTGCTGAAA ACTTAGGCGT CAAAAACGCC AAATGGGATA GACAAGATGG CTATCTGGTT
AACAGGGACT GTTACAACAG TTATCTCTAT CTTGTAGAGA ACACGAATAC CACCCATATC
GACAAGTTTA TCCTGCATGG AAAGGAGTTA AATCAATACC TTGATGGTGG TTCAGCACTT
CACCTCAATC TTGAAGAAAC GTTAACCTAT AAAAACGCAC TCAATCTTCT GAACATCGCA
GCAAAAGCAG GGTGCAACTA TTTTTGTGTG AATGTGAAAA TTACGATCTG CAATACCTGC
GAAGCTATCG ACAAGCGCAC TTTACATGCG TGTCCATCAT GCGGCTCTGA AGACATCGAT
CATGGAACTC GCGTAATTGG ATACTTAAAA CGCGTTTCTG CTTTTTCCAA AGGCCGACGT
GATGAGCATG CGCTGCGTCA CTATCACACT CATGCGAGGC TTCACAATTA A
|
|---|
| Protein sequence | MLTLDDKHIK QKLQFIDSYL NAETAADGAK LDANANVTHK NIATLEAELM KDYFIQVNRA
LVSNKIEELF GHELALEYQR QIEAHEIYVH DETSLKPYCT SITMYPFLLN GLTELGGESK
APQHIESFCG SFVNLVFAIS AQFAGAIATV EFLIYFDHFA RRDYGENYLN THAKEVANHL
QHVVYALNQP AAARGYQSVF WNISLYDKFY FDSMFGEFVF PDMSKPEWKN IESLQAFFLE
WFNNERKRAV LTFPVVTAAM LTKNGAVKDV NFAATCAKAM SEGNSFFVYQ SESADSLASC
CRLRNEITDN TFSYSLGAGG VSTGSINVIT INMNRLIQDG RDLSSEVQKI HKYQVAYRRL
IEEYKAAGAL PVYDAGFISL DKQFLTLGVN GLAEAAEFLG IEVGNNRKYK DFVRAQLQVI
YEQNRTASKH FKCQFNTEFV PAENLGVKNA KWDRQDGYLV NRDCYNSYLY LVENTNTTHI
DKFILHGKEL NQYLDGGSAL HLNLEETLTY KNALNLLNIA AKAGCNYFCV NVKITICNTC
EAIDKRTLHA CPSCGSEDID HGTRVIGYLK RVSAFSKGRR DEHALRHYHT HARLHN
|
|---|
| |