Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | MADE_03714 |
Symbol | |
ID | 6777998 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Alteromonas macleodii 'Deep ecotype' |
Kingdom | Bacteria |
Replicon accession | NC_011138 |
Strand | + |
Start bp | 4012432 |
End bp | 4013208 |
Gene Length | 777 bp |
Protein Length | 258 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 642757167 |
Product | SH3, type 3 |
Protein accession | YP_002128000 |
Protein GI | 196158511 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3103] SH3 domain protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.0000284257 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGTTGCGC TAAGCACAGC TGATGATGCT GACACCTTAC CTTTGTCACT TAGTTTTCGC AATGCTACAA CACCTTTCTT AGGTGCTAAA TTTAGACAAA AGTGGAACAA ACTTGCCTTT ATCGCGGTCA ACCAATACCA TCTTCACGTT TTAAATTCTA AAATTGGACT TCATATGATT CGAAAGTGGT TAGCAGCAGC CCTTATTGCG TGCTCTTTTC AAGCATTTTC GCTACAAGAT ATCGCTGATT TAGAAGCGTC TTCTTCACAT TACATTCGAG ATGACTTATT TATCTTCGTG CATACTGGGC CTGGCCGTAA TTACCGTATT TTAGGGTCAA TTGAAGCAGG TACCCCCATT ACGGTACTTG CTAGAGATAA CGATGCCGAG TTCACACAAA TTACCGATCC GGAAGGTCGT AAAGGCTGGG TAGAAAGTAA ATTTGTGTCG AATACTATGT CACAAGCAGA GCAGCTTCCT ATCATCAGCG AGAAACTGGC AGAGAGCCAG AGCAGTCTGC AGACCTTACA GTCTGACAAC GCAAAGCTCC GTCAGCAGCT AAACGATGCA CGTCAGCAAG TATCGAAACT TACCACGACG AATGACGAGC AAGCCTCGCA AATTATTCGT TTAACGGCGA AGGTTGAAAG CGCGAATAAA GATGAGCTAG TAATGTGGTT TACCCGCGGC GGAATAGTGG CTGGCATCGG TATTTTGCTA GGCGTAATGC TAACCTATCT GCCAAAGCGC AAGCGCCGAA GCAGTGAATG GATGTAA
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Protein sequence | MVALSTADDA DTLPLSLSFR NATTPFLGAK FRQKWNKLAF IAVNQYHLHV LNSKIGLHMI RKWLAAALIA CSFQAFSLQD IADLEASSSH YIRDDLFIFV HTGPGRNYRI LGSIEAGTPI TVLARDNDAE FTQITDPEGR KGWVESKFVS NTMSQAEQLP IISEKLAESQ SSLQTLQSDN AKLRQQLNDA RQQVSKLTTT NDEQASQIIR LTAKVESANK DELVMWFTRG GIVAGIGILL GVMLTYLPKR KRRSSEWM
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