| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_03402 |
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| Symbol | |
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| ID | 6778843 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Alteromonas macleodii 'Deep ecotype' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011138 |
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| Strand | - |
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| Start bp | 3660821 |
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| End bp | 3662269 |
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| Gene Length | 1449 bp |
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| Protein Length | 482 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 642756850 |
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| Product | RNA methyltransferase, TrmA family protein |
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| Protein accession | YP_002127688 |
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| Protein GI | 196158199 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0345173 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGGCAAACC TTTTTAAACA GTCTCGCGCT AAGCAAAAAA ATAAAACAAC CCCATCCCAA
ACTCAGACGA GCACGAAGGG AAGTGCTAGG GCGAATGCGC AAGTCGCCGG GCTTAGGTTT
AAAAAAAGCA AGCAATCAAA AGAACACAAT ACCGCGCAAG ACGCCAATAA TAATGCCATA
ACCATCCAGG AATTAGATTG GATGGGACAG GGCGTGGCTC GCGGCGCTAC GATGTATTTC
GTTGAAGGTG CACTACCCGG TGAAACTTGT GACATAGAGG TGGTATCGAG CAAAAAGAAG
GTTGTTAGTG CTAAAACAAT TAGCATCCAA GGGCCAAGCG AATTGCGGCA ACCCCCCTTC
TGCCCGGTAT TTGAAGCTTG CGGTGGCTGT CAGTTGCAGC ATATTGATGC CGACGCTGCG
TTAGCGTACA GAGATAACGC GCTTAAAATT ATGATGGAGC GTCAGCTTTC TATAGGTAGT
GGCGTTTGGC AAGCTCCACT GGTAGGACCG CGCCCTCAAT ATCGCAGGAA AGCGCGGTTA
GCTATTGATG CCCGCAACCC AGATAATATT AAATTGGGTT TCAGAGAGGC CAACAGCAAC
AAAGTAGTTA ACCTTGACAC CTGCCCTATA CTCGTTAACC CACTATCAAC GGCTATAGGC
CCGTTGCGTA ATGCGCTAGA GGGGTATGAT AGCGCGCGCC ATATTGGGCA TATCAGTCTT
ATTGCTGGCG ACAACAGGGC GCAAGTAGTT ATTAAACACA CTAAGGCACT AGAAGATGCG
CTTATCGAAA CGGTAGATGC TTTTGCTAAA GCTCTCGGTT TAGATGTGGT GCTTGAAAAT
AAGCAAGGTC GCCTGCGCAG TGTAGGGGAA GCTCAGGGCT TAATTATGCA TACCGTTGAC
GGCTGCTCAA TTTCCCCCAG TGCTAACGAC TTTATACAAA TTAATAAAGT GGTTAACGAA
AAAATGATCA ATCAGGCTTT AGTATGGCTA GACCCGCGCC CTAATGAACG TATCGCTGAT
TGGTTTAGCG GCTTAGGGAA TTTTACCTTG CCTATTGCGA AAAAGGGCGC CTTGGTACAG
GCAATTGAAG GGGTTGCAGA GATGGTGCTC CGTGCTAAAG ATAATGCACA GCAACAGGGC
ATTGAAAACG TTGAGTGGTT GCATTTAGAC TTGGCCAATA AGGCTAACGT CGAAGCGTCT
TTGCAGCAGG GTTTTGATAA AGTATTGCTC GACCCGTCAA GAGAGGGAGC CTTGACGGTT
TGTCACGCGC TTGTAAAAGC ACTACCAAAA ACGATAGTGT ATGTTTCTTG CAACCCAAGC
ACGTTTTCTA GAGACGCAAA AGTGTTGATA AACGGGGGGT ATGAAATGGA AAAAGCGGGC
GTAGCAGAGA TGTTCCCCTT CACCCATCAC ATGGAAATGA TGGCCTTGTT TACGCAAAGG
CAGCAGTAA
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| Protein sequence | MANLFKQSRA KQKNKTTPSQ TQTSTKGSAR ANAQVAGLRF KKSKQSKEHN TAQDANNNAI
TIQELDWMGQ GVARGATMYF VEGALPGETC DIEVVSSKKK VVSAKTISIQ GPSELRQPPF
CPVFEACGGC QLQHIDADAA LAYRDNALKI MMERQLSIGS GVWQAPLVGP RPQYRRKARL
AIDARNPDNI KLGFREANSN KVVNLDTCPI LVNPLSTAIG PLRNALEGYD SARHIGHISL
IAGDNRAQVV IKHTKALEDA LIETVDAFAK ALGLDVVLEN KQGRLRSVGE AQGLIMHTVD
GCSISPSAND FIQINKVVNE KMINQALVWL DPRPNERIAD WFSGLGNFTL PIAKKGALVQ
AIEGVAEMVL RAKDNAQQQG IENVEWLHLD LANKANVEAS LQQGFDKVLL DPSREGALTV
CHALVKALPK TIVYVSCNPS TFSRDAKVLI NGGYEMEKAG VAEMFPFTHH MEMMALFTQR
QQ
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