Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | MADE_03370 |
Symbol | prpB |
ID | 6777261 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Alteromonas macleodii 'Deep ecotype' |
Kingdom | Bacteria |
Replicon accession | NC_011138 |
Strand | + |
Start bp | 3625050 |
End bp | 3625925 |
Gene Length | 876 bp |
Protein Length | 291 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 642756818 |
Product | 2-methylisocitrate lyase |
Protein accession | YP_002127656 |
Protein GI | 196158167 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2513] PEP phosphonomutase and related enzymes |
TIGRFAM ID | [TIGR02317] methylisocitrate lyase |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTGCAG GAAAGAAATT CAGAACCGCG TTAGAGAATA ACAAACCTCT TCAAATCGTA GGCACTATTA ATGCCTACAC GGCCATGATG GCGAAGACCA TTGGTCATCA AGCTATTTAC CTTTCAGGTG GCGGCGTAGC TAACGCCTCG TATGGCTTGC CAGATTTAGG CATGACCTCG CTCAATGACG TGATTGCTGA TGTTCAGCGT ATTACCAGTG CGTGTGACCT ACCGCTTATG GTGGATATCG ACACAGGCTG GGGCGGTGCA TTTAACATTG CCAAAACCAT TCGCGATATG GAAAAAGCCG GCGCGGCCGC GGTACATATG GAAGACCAAG TCGCACAAAA GCGCTGTGGT CACCGCCCTA ATAAAGAAAT TGTGAGTACA GCGGAAATGG TAGATCGCAT TAAAGCTGCC GTTGATGCCA GAACCGACCC TGACTTTTTC ATTATGGCGC GCACCGACGC ATTCGCGCAA GAAGGCTTAG AAAAAGCCAT TGAACGCGCA AAAGCCTACG TTGAAGCGGG CGCAGACGGT ATTTTTGCAG AAGCAGTGCA GACCGAAGAA CACTATCGCG CATTTGCAGA AGCACTAGAC GTTCCTATTC TTGCCAATAT CACTGAGTTC GGCAAAACCG AACTATGGAA CAAAGAAGAA CTTGGTGAAT GGGGTGCTGA TATGGTGCTT TACCCGCTAA GTGCGTTCCG CGCCATGAAT AAAGCAGCAG AAATGGTGTA CAAATCTATA CTTGAAAATG GCGATCAAAA GGCTGTCGTC GACACCATGC AAACACGCAT GGAGCTATAC GATTACCTTG GCTACCACGA ATACGAGCAA AAGCTAGATG CGCTATTTGC CGACGGCAAA AACTAA
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Protein sequence | MSAGKKFRTA LENNKPLQIV GTINAYTAMM AKTIGHQAIY LSGGGVANAS YGLPDLGMTS LNDVIADVQR ITSACDLPLM VDIDTGWGGA FNIAKTIRDM EKAGAAAVHM EDQVAQKRCG HRPNKEIVST AEMVDRIKAA VDARTDPDFF IMARTDAFAQ EGLEKAIERA KAYVEAGADG IFAEAVQTEE HYRAFAEALD VPILANITEF GKTELWNKEE LGEWGADMVL YPLSAFRAMN KAAEMVYKSI LENGDQKAVV DTMQTRMELY DYLGYHEYEQ KLDALFADGK N
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