| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_03352 |
|---|
| Symbol | |
|---|
| ID | 6778700 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alteromonas macleodii 'Deep ecotype' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011138 |
|---|
| Strand | + |
|---|
| Start bp | 3608459 |
|---|
| End bp | 3609589 |
|---|
| Gene Length | 1131 bp |
|---|
| Protein Length | 376 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 642756800 |
|---|
| Product | Carboxynorspermidine decarboxylase |
|---|
| Protein accession | YP_002127638 |
|---|
| Protein GI | 196158149 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0019] Diaminopimelate decarboxylase |
|---|
| TIGRFAM ID | [TIGR01047] carboxynorspermidine decarboxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.16649 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGACCGATT TAACCCAACG CACTGATATC CCTTCTCCTT GCTACGTGTT AGAGGAAGCT
AAACTAATTC GAAACCTTGA GCTTATGAAA CGAGTTCAAG AGGAGTCTGG TGCCCGCATT
ATTTTAGCGC TGAAAGGCTT TTCGATGTGG TCATGCTTCG ACATTATTAA ACAGTATTTA
CACGGTGCGA CGGCGAGTTC GGTATGGGAA GCTAAACTTG CCGCTGAAAT GGGGAAAGAG
GTGCATGCTT ACTCTCCAGC GTATAAAGCA AACGACGCAA AAGAACTAGC AGGCTTAGTT
AATCACTTAT CGTTCAATAG CCTTAGTCAA TGGAACACGC ATAAAGAAGC CTTAGCTAAT
GTTTCACTAG GTCTTCGCAT CAATCCAGAG CATCAAGAAG CCGATACACC CTTGTACGAC
CCAGCGGCGC CAGGTTCGCG CTTAGGCATA CGCGCTAGCG AGCTAGAAGA TGTGGATCTG
ACGGGTATAG AGGGCTTTCA CTGCCACAAT CTTTGTGAGT GTGATTCTTT TGCCACGGCA
CGCACCCTTG AAGCTATCGA AAAGCGCTTT GGCAAATGGC TCGGTCAATT GAAATGGTTG
AACCTAGGTG GCGGACACTT AATGACGAGC GAAGGTTACG ATGTTGACCA CCTTATATCT
ACTTTGAAAG ATTTCAAAAC GCGCTACTCT CATTTAGATG TGATTTTAGA GCCAGGGTCT
GCCGTTGCGT GGCAAACAGG CCCGCTTATT TGTGAGGTCG TGGATATGGT GGAAAACGAC
GGGGATATCG CTATTTTGGA CATTTCAGCG ACAGCACACA TGCCAGACGT ACTGGAAATG
CCCTACCGCC CTACAATTCT GGGCGCCGGA ATGCCCGATG AAAAAGCGTA TAACGTGAAG
CTTGGTGGTA ATTCGTGCCT TGCAGGCGAT GTTATTGATA CCTACTCCTT CGACGAGCCG
CTAAAAGCCG GTGACCGCTT GCAGTTTGAA GATATGATGC ACTACACCAT GGTAAAAACC
ACGTTCTTTA ACGGTGTAGA GCACCCTGCT ATTGGTATTT TACGTGCTAA TGGCGACTTT
GAACTGGTTC GCGAATTCAG CTACGAAGAC TTTAAAGGAC GTTTGTCGTA A
|
|---|
| Protein sequence | MTDLTQRTDI PSPCYVLEEA KLIRNLELMK RVQEESGARI ILALKGFSMW SCFDIIKQYL
HGATASSVWE AKLAAEMGKE VHAYSPAYKA NDAKELAGLV NHLSFNSLSQ WNTHKEALAN
VSLGLRINPE HQEADTPLYD PAAPGSRLGI RASELEDVDL TGIEGFHCHN LCECDSFATA
RTLEAIEKRF GKWLGQLKWL NLGGGHLMTS EGYDVDHLIS TLKDFKTRYS HLDVILEPGS
AVAWQTGPLI CEVVDMVEND GDIAILDISA TAHMPDVLEM PYRPTILGAG MPDEKAYNVK
LGGNSCLAGD VIDTYSFDEP LKAGDRLQFE DMMHYTMVKT TFFNGVEHPA IGILRANGDF
ELVREFSYED FKGRLS
|
|---|
| |