| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_03298 |
|---|
| Symbol | |
|---|
| ID | 6778575 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alteromonas macleodii 'Deep ecotype' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011138 |
|---|
| Strand | + |
|---|
| Start bp | 3560643 |
|---|
| End bp | 3561251 |
|---|
| Gene Length | 609 bp |
|---|
| Protein Length | 202 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 642756746 |
|---|
| Product | alanine racemase domain protein |
|---|
| Protein accession | YP_002127584 |
|---|
| Protein GI | 196158095 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0325] Predicted enzyme with a TIM-barrel fold |
|---|
| TIGRFAM ID | [TIGR00044] pyridoxal phosphate enzyme, YggS family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGCTAGCGG TTAGCAAAAC AAAACCCGTA TCAGATATCA TTGAAGCGTA TGAAGCGGGA
CAACGAATGT TTGGTGAAAA CTACGTGCAG GAAGGTGTTG AAAAGGTTCA GGAACTTTCC
AACCTCGACA ATATCGAGTG GCATATGATT GGCCCTATTC AGTCGAATAA AACTAAAGTA
GTAGCCGAAC ATTTCGATTG GGTACAATCG GTAGACAGAG AAAAGATTGC GCGAAGATTA
AATGAACAGC GCCCAGAATC ACTGCCGCCC TTAAACGTGT GCATACAGGT TAATGTCGAT
GACGAAGACA GTAAGTCGGG TGTTTCGCTT AGTGAATTAG CTTCGCTAGT TGAGTTTGTT
TCATCGCAAG AGCGCCTTTG TCTGCGAGGG TTGATGGCTA TTCCAAAGGC AAACCCTGAC
GATGAGCAAC AGCGTCAAAC CCTATCTAAG CTCAAAGAAT TATTTGACCA CTACCATACA
TCACTGAGCA ATTTTGATAC CCTATCCGTA GGAATGAGTA GTGATATGGT AGAGGCCATC
CACCATGGGT CGACTATGGT AAGAGTTGGG ACGGCTATTT TTGGTAAGCG AGATTACCCA
AACCGGTAG
|
|---|
| Protein sequence | MLAVSKTKPV SDIIEAYEAG QRMFGENYVQ EGVEKVQELS NLDNIEWHMI GPIQSNKTKV
VAEHFDWVQS VDREKIARRL NEQRPESLPP LNVCIQVNVD DEDSKSGVSL SELASLVEFV
SSQERLCLRG LMAIPKANPD DEQQRQTLSK LKELFDHYHT SLSNFDTLSV GMSSDMVEAI
HHGSTMVRVG TAIFGKRDYP NR
|
|---|
| |