Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | MADE_03160 |
Symbol | |
ID | 6778167 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Alteromonas macleodii 'Deep ecotype' |
Kingdom | Bacteria |
Replicon accession | NC_011138 |
Strand | - |
Start bp | 3417996 |
End bp | 3419987 |
Gene Length | 1992 bp |
Protein Length | 663 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 642756610 |
Product | transketolase 1 (TK 1) |
Protein accession | YP_002127448 |
Protein GI | 196157959 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0021] Transketolase |
TIGRFAM ID | [TIGR00232] transketolase, bacterial and yeast |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCCTCTC GTCGTGAACT CGCCAATGCT ATCCGTGCAC TAAGCATGGA TGCTGTTCAA CAAGCTAAAT CAGGTCACCC AGGCGCCCCA ATGGGGATGG CTGACATCGC GCAGGTACTA TGGGGTGATT TCTTATCACA CAATCCTGCT AACCCGTCTT GGGCTAACCG CGATCGCTTT GTGCTTTCAA ATGGTCACGG CTCGATGCTG TTGTATTCTT TGCTTCACCT TTCAGGCTAC GAACTGCCTA TTGAAGAGTT AAAGAACTTC CGTCAGCTTC ACTCTAAAAC CCCAGGCCAC CCAGAGTATG GCTATGCGCC AGGTGTTGAA ACTACTACTG GCCCGCTAGG TCAGGGTATT AGCAATGCAG TGGGTATGGC GCTTGCTGAA AAAGTGCTAG CAGCACAATT CAACAAAGAC GGTCACACTA TTGTTGATCA TCACACCTAT GCATTCTTAG GCGACGGCTG CTTGATGGAA GGTATCTCAC ACGAGACGTG TTCACTAGCC GGTACGCTTG GTCTTGGTAA GCTCATCGCA TTTTGGGACG ACAACGGCAT TTCAATTGAC GGTGAAGTAG AAGGTTGGTT CACCGACGAC ACACCAGCGC GCTTCAAGAG TTACGGCTGG GAAGTGATTG AAGGTGTTGA CGGTCACGAT GCTGAGCAAG TGAAAGCCGC AATCGAAAAA GCGCAAGCGA ATACAACGCA ACCAACGCTA ATTTGCTGTA AAACCACCAT TGGATTTGGT TCGCCTAATA AAGAAGGTAC TGAGTCTTGC CACGGTGCAC CGCTTGGCGA TGATGAAATT GTTGCTACGC GTGAGAAGCT TGGTTGGAGC CACGGCGCAT TTGAAATTCC AGACGATATC TACGCGGGCT GGGATGGTAA AGACAAAGGC TCAAAAACGG AAAGCGCGTG GAATGACGCT TTCGCAGCAT ACGAAGCCGC CTACCCAGAG CTTGCAGCAG AATTCAAACG CCGTGTAAAT GGCGAGTTGC CAGCAGATTT CAGCGACAAA GCAGACGCTA TCATCGCTGA ACTTCAAGCT AACCCACAAA ATATCGCGTC ACGTAAAGCG TCGCAAAATG CATTAAACGC GTTTGGTCCG TTACTTCCTG AGCTTTTAGG CGGCTCTGCC GACCTTGCTG GTTCTAACCT GACTATTTGG GAAGGTAGCA AAGGCGTTGA AGCAAACGAT GCATCAGGTA ACTACATTTA TTACGGTGTA CGTGAGTTTG GTATGTCGGC CATGATGAAT GGTATTGCCC TTCACGGTGG CTTTAAGGCA TACGGTGCAA CCTTCCTAAT GTTTATGGAA TATGCACGCA ACGCGGTACG TATGGCAGCG CTAATGAAGC AGCCTGCAAT TTTCGTTTAC ACCCACGATT CAATTGGTCT AGGTGAAGAC GGCCCAACTC ACCAGCCGGT GGAGCAGGTG GTTGCGCTAC GTGCAACGCC TAACCTTGAT AACTGGCGCC CTTGTGATCA GGTTGAGTCT GCTGTGTCGT GGAAGTCTGC CATTGAGCGC ACTGACGGCC CAACAACACT AATCTTCACA CGTCAAGGCT TAGCGCAGCA AGAAAGAACG GCTCAACAAG TGGCTGATAT CGCGAAAGGC GGTTACGTAC TTAAAGACTG TGAAGGTACG CCTGAGCTTA TTCTTATTGG TACCGGTTCT GAAGTGCAGC TAGCTGTTGA AGCGGCAGAA AAACTTACCG AGCAAGGTAA AGCGGTTCGC GTAGTATCTA TGCCATCTAC TGATGTTTTT GATCGTCAGT CTGCTGACTA CCGAGAAAGC GTACTGCCGT CTAGTGTTGT TAAACGCGTA GCGGTTGAGG CCTTGTCAAA ATACAGCTGG TACAAGTACG TTGGCTTTAA CGGCGCTATC GTAGGTATGG ATACCTTTGG TGAGTCTGCA CCTGCAGGCG ACCTATTTAA GCACTTCAAC ATTACCACTG ACGCTGTAGT AGAGGCTGCA CTGTCTCTGT AA
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Protein sequence | MPSRRELANA IRALSMDAVQ QAKSGHPGAP MGMADIAQVL WGDFLSHNPA NPSWANRDRF VLSNGHGSML LYSLLHLSGY ELPIEELKNF RQLHSKTPGH PEYGYAPGVE TTTGPLGQGI SNAVGMALAE KVLAAQFNKD GHTIVDHHTY AFLGDGCLME GISHETCSLA GTLGLGKLIA FWDDNGISID GEVEGWFTDD TPARFKSYGW EVIEGVDGHD AEQVKAAIEK AQANTTQPTL ICCKTTIGFG SPNKEGTESC HGAPLGDDEI VATREKLGWS HGAFEIPDDI YAGWDGKDKG SKTESAWNDA FAAYEAAYPE LAAEFKRRVN GELPADFSDK ADAIIAELQA NPQNIASRKA SQNALNAFGP LLPELLGGSA DLAGSNLTIW EGSKGVEAND ASGNYIYYGV REFGMSAMMN GIALHGGFKA YGATFLMFME YARNAVRMAA LMKQPAIFVY THDSIGLGED GPTHQPVEQV VALRATPNLD NWRPCDQVES AVSWKSAIER TDGPTTLIFT RQGLAQQERT AQQVADIAKG GYVLKDCEGT PELILIGTGS EVQLAVEAAE KLTEQGKAVR VVSMPSTDVF DRQSADYRES VLPSSVVKRV AVEALSKYSW YKYVGFNGAI VGMDTFGESA PAGDLFKHFN ITTDAVVEAA LSL
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