Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | MADE_03058 |
Symbol | |
ID | 6779126 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Alteromonas macleodii 'Deep ecotype' |
Kingdom | Bacteria |
Replicon accession | NC_011138 |
Strand | + |
Start bp | 3307559 |
End bp | 3309388 |
Gene Length | 1830 bp |
Protein Length | 609 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 642756507 |
Product | capsular polysaccharide transport protein, putative |
Protein accession | YP_002127346 |
Protein GI | 196157857 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1596] Periplasmic protein involved in polysaccharide export |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.715854 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGTTTA TGAACATCAA AAACTCTTTT AAGGCGCTAA CTTACGCCGC GTACGCGGTG GCTGTTTGCA GTGCATTTGT TAACCCTGCG TCTGCGCAAA GCGTCGAGCA ATTACAGCAA TTAAGAGAGC GGGCACAGCA ATCGCAAAGC GGTGCAGCTA CCCCGTCGGT CTCTCCCTTA AGCATTTCTA CCCAGCGTAC TTTGCCCGGA GCTACGGCTT CAGCCAATAC GATGGGCCAG TTTTCTACAC AGCCTAGAAA CGGAGTAAAC CTGCCGGGCG AACCCACTAT CGATACTGTT TTCCCAGCGC AAGCGCCTAT GGAAAACCCG CCTTTTGCGG CTAACTTATT TATCGGTGGC TTCGAGTCTG AGCGCAGCTC GGGATTAAAC GACAATTACT TGATTGCCCC TGGCGATAAA ATCTCAATTT GGCTTTGGGG TGCAGTAAAC TTTTCAGATG TTGTTACCGT GGATAATCAA GGTAACATTT TTATTCCCAA TATTGGTCCT ATACGCATAG CAAATACACC CGCAGGCAGT GTAAACCAAA CCGTAACTAG CAAAATCCGC CAAGTTTACA CCAACGACGT CAATGTTTAC GTAAACCTTT TAACGTCAAC ACCGGTATCG CTTTATGTAT CAGGCCCAGT GCTAAGACCT GGTCAATACG CAGGCCTAGC TTCAGATAGC GTTTTGTACT ATTTAAAGCG CGCTGGCGGA ATTGACTTTC AACGGGGTAG TTTTAGACAA ATCGACATTG TACGAAACGG CAAAGTCGTG GCCTCAGCAG ATTTGTACGC CTTTTTTAGA AGCGGAAAGC TGCCTGAAAT TTCTTTTAAG GACGGCGATA CCATTTTAGT GCACCCTATT GGCAACACTA TTGTGGTTGA AACCGGCGCG CGAAATAGTT TTACTTTCGA GTTTTTAAAC GAAGAGCTTA ACGGTGGTGT AGTTAATTAC TTTGCACGCC CTGGTGAGTT TGCTTCTCAT GCTTCGGTTT CAGGAATTCG CAACAACAAG CAATTTGCAC GCTACGTAAG CGTGAACGAG TTTGCGTCGC TTAAGCTAAG CGCCGGCGAC ACTGTTGAGT ATATTGCCGA TCACGAACCT CAAATTTACC GCATTAATGT AGCAGGTGCT TTCGCGGGGG CCTCTCAAGT AATGGTGGAT AAAGGCGCGA GACTCATTGA CGTACTCGAC CACATCGAAG CTGATACCAC CCTTTCTGAT ACACAAAATA TCTACCTTTT AAGAGAAAGC GTAGCGGTAA AACAAAAAGA GATTATCGAA GAAGGCCTAC AACGCCTAGA GCGAAGCATG TACACGGCGC CAATTAGTTC AACTGGTGAA GGGGCGATTC GCGCCCAAGA AGCACAACTT GTGGCTGACT TTATCACCCG CGCACGACAA GTTGAGCCTC AAGGCAGAGT GGTGGTATCT GAAAATGGCG AGATTGCTAA CATTCTTCTT GAGCCTAATG ACACGATCGT TATTCCAGAA GTCACCGACC TGATACACGT GGGCGGAGAA GTACTGCTTC CGCAGTCTGT CGTGTTTAAC CCAGATGCAA CCACAGAAGA CTACGTTGCA TGGGCTGGTG GCTTTACCGA GCGGGCTGAA GATGAACGTA TTCTTATCGT TCGTAAAAAC GGTAACGTTA CCTTTACTAG CGTGAACGAT TCATTCTTAT CAAGCAATGA TAGTAAACTT GAGCCTGGCG ATCAGATCAT TGTGTTACCT GCTATCGATA CGAAGATTTT GCAAGCGGTT AAAGACATTA CCCAAATCGT TTATCAAATT GCGATTGCAG CTAACGTAGC TACTGATTAA
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Protein sequence | MKFMNIKNSF KALTYAAYAV AVCSAFVNPA SAQSVEQLQQ LRERAQQSQS GAATPSVSPL SISTQRTLPG ATASANTMGQ FSTQPRNGVN LPGEPTIDTV FPAQAPMENP PFAANLFIGG FESERSSGLN DNYLIAPGDK ISIWLWGAVN FSDVVTVDNQ GNIFIPNIGP IRIANTPAGS VNQTVTSKIR QVYTNDVNVY VNLLTSTPVS LYVSGPVLRP GQYAGLASDS VLYYLKRAGG IDFQRGSFRQ IDIVRNGKVV ASADLYAFFR SGKLPEISFK DGDTILVHPI GNTIVVETGA RNSFTFEFLN EELNGGVVNY FARPGEFASH ASVSGIRNNK QFARYVSVNE FASLKLSAGD TVEYIADHEP QIYRINVAGA FAGASQVMVD KGARLIDVLD HIEADTTLSD TQNIYLLRES VAVKQKEIIE EGLQRLERSM YTAPISSTGE GAIRAQEAQL VADFITRARQ VEPQGRVVVS ENGEIANILL EPNDTIVIPE VTDLIHVGGE VLLPQSVVFN PDATTEDYVA WAGGFTERAE DERILIVRKN GNVTFTSVND SFLSSNDSKL EPGDQIIVLP AIDTKILQAV KDITQIVYQI AIAANVATD
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