Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | MADE_03027 |
Symbol | ispH |
ID | 6777439 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Alteromonas macleodii 'Deep ecotype' |
Kingdom | Bacteria |
Replicon accession | NC_011138 |
Strand | - |
Start bp | 3276990 |
End bp | 3277934 |
Gene Length | 945 bp |
Protein Length | 314 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 642756476 |
Product | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
Protein accession | YP_002127315 |
Protein GI | 196157826 |
COG category | [I] Lipid transport and metabolism [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0761] Penicillin tolerance protein |
TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAGATAC ATTTAGCTAA CCCTCGTGGT TTCTGTGCGG GCGTAGACAG AGCTATCACT ATTGTAGAAC GGGCGCTTGA AATGTTTGAG CCGCCCATCT ATGTGCGCCA CGAAGTTGTG CACAATAAAT TCGTAGTAGA CGGATTACGT GAGCGCGGCG CGCTGTTTGT GGATGAGCTT CATGAAGTGC CAGACGATAG CATTGTGATT TTCTCTGCCC ACGGCGTGTC GCAAGCGGTT AGAAAGGAAG CGGAAAATCG CGGCCTTAAG GTGTTTGACG CAACCTGTCC ATTAGTCACA AAAGTGCATA TGGAAGTAAC CCGCGCTAGT AAAACAGGTA CTGAATGTAT CTTAATTGGT CACGCCGGTC ACCCCGAAGT AGAGGGGACT ATGGGCCAAT ACAGTAATGA CGAAGGCGGT ATTTATTTAG TAGAGTCTGA GGCTGATGTG GCAACATTGG AAGTTAAAGA CCCAACGAAC CTTTATTATT GCAGCCAAAC TACGTTATCT GTTGATGATA CTGCCGATGT TATCGACGCC CTTCGCGCTA AGTTTCCAAA AATCAATGGC CCGAGAAAAG ATGATATTTG CTATGCCACG CAGAATCGCC AAGACGCGGT GCGCGATTTA GCGCAAGACT GTCAGGTACT GTTAGTGGTT GGCGCACAGA ACAGCTCTAA TTCCAACCGC CTTCGAGAGT TAGCGGAAAA AATTGGTGCG AAGGCTTACT TAATCGCTGA TGCCGACTGT ATACAGCAAG AGTGGCTAGA AGGTATTGAA CATATTGGCG TTACCGCTGG CGCATCTGCC CCCGAAGTAT TGGTGCAGGG TGTGGTAAAC AAGCTTAAAG CGTGGGGGGC TGTTTCAGCT TCTGAGCGTT CAGGGCGTGA AGAAAACGTA GAGTTTGCTG TACCGAAAGA ATTAAGGGTT AAACAAGTAG TCTGA
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Protein sequence | MQIHLANPRG FCAGVDRAIT IVERALEMFE PPIYVRHEVV HNKFVVDGLR ERGALFVDEL HEVPDDSIVI FSAHGVSQAV RKEAENRGLK VFDATCPLVT KVHMEVTRAS KTGTECILIG HAGHPEVEGT MGQYSNDEGG IYLVESEADV ATLEVKDPTN LYYCSQTTLS VDDTADVIDA LRAKFPKING PRKDDICYAT QNRQDAVRDL AQDCQVLLVV GAQNSSNSNR LRELAEKIGA KAYLIADADC IQQEWLEGIE HIGVTAGASA PEVLVQGVVN KLKAWGAVSA SERSGREENV EFAVPKELRV KQVV
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