| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_02989 |
|---|
| Symbol | |
|---|
| ID | 6778991 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alteromonas macleodii 'Deep ecotype' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011138 |
|---|
| Strand | + |
|---|
| Start bp | 3241751 |
|---|
| End bp | 3243418 |
|---|
| Gene Length | 1668 bp |
|---|
| Protein Length | 555 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 642756440 |
|---|
| Product | putative ABC transporter ATP-binding protein |
|---|
| Protein accession | YP_002127279 |
|---|
| Protein GI | 196157790 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0488] ATPase components of ABC transporters with duplicated ATPase domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTCAAT ACGTTTACAG TATGCATCGT GTGGGGAAAA TCGTCCCACC TAACAGACAC
ATTCTTAAAG ATATTTCACT TAGCTTTTTC CCTGGTGCCA AAATTGGTGT GCTAGGTCTT
AACGGCGCGG GTAAATCAAC GCTACTTCGC ATTATGGCCG GCGTTGACAC TGAAATTGAA
GGTGAAGCGC GACCTCAGCC TGGGCTAAAA GTGGGCTACC TTCCTCAAGA GCCTCAGCTT
GATGAAAGTA AGGATGTGCG CGGCAACATC GAAGAAGCGG TAGCCGATGT GAAACACGCA
TTGACTCGTC TTGATGAAGT ATACGCAGCT TATGCCGAAG CAGACGCCGA CTTCGACGCC
TTAGCAAAAG AACAAGGCGA GCTGGAAGCC GTTATTCAAG CGAAAGACGG TCACAACCTA
GAAAACGCAC TAGAGCGTGC CGCTGATGCC CTTCGCCTTC CAGCTTGGGA TGCTGATGTA
AGCAAATTAT CGGGTGGTGA ACGCCGCCGT GTCGCGCTTT GTCGATTGCT GCTAGAAAAG
CCGGAAATGT TGCTTCTTGA CGAACCGACT AACCACTTAG ATGCCGAATC AGTAGCGTGG
CTAGAGCGCT TCCTTCACGA CTATGAAGGT ACCGTGGTAG CCATTACCCA CGATAGATAC
TTCCTTGATA ATGTGGCAGG TTGGATCTTA GAACTTGACC GTGGCGAAGG CATTCCATGG
GAAGGCAACT ATTCTTCTTG GTTGGAACAA AAAGAAAACC GACTAGAGCA AGAAGAGCGC
ACCGAAACCG CCCGCATGAA AAGCATGAAA CAGGAACTTG AATGGGTACG CTCGAATCCG
AAAGGTCGTC ATGCTAAAAG TAAGGCACGT ATGGCCCGCT TTGAAGAGCT ATCTACCAGC
GATTACCAAA AGCGTAACGA AACCAATGAG CTATTCATTC CACCGGGTGA GCGTTTAGGT
GACAAGGTTA TTGAAGTAAG CAACCTTAAA AAGTCCTATG GCGATCGCGT ACTTATCGAT
GACTTGACGT TCAAAGTACC AAAAGGGGCG ATTGTAGGTA TCGTTGGTCC TAACGGTGCG
GGTAAATCTA CCCTATTTAG AATGCTTACC GGCGCCGAGC AACCTGATTC AGGTACTATC
GATTTAGGCG ATACGGTGCA AATTGCTGCG GTAGAGCAGT TCCGTGACCA CATGAATGAA
GATAACACCG TATGGAAAGA AATTTCTGAC GAGCAAGACA TCATTCGCAT TGGTAACTTT
GAAATAAACA GCCGCGCCTA CTGCAGCCGT TTTAATTTTA AAGGCACCGA CCAGCAAAAG
TTTATTAAAG ACTTGTCAGG TGGTGAGCGC AACCGTGTAC ACCTTGCGAA ACTGCTTAAA
GCTGGCGGCA ACGTGTTGCT GCTAGATGAA CCAACTAACG ACCTAGACGT TGAGACACTT
CGCGCGCTGG AAAACGCGTT ATTAGAGTTT CCGGGCTGCG CTATGGTTAT CTCGCACGAT
CGTTGGTTCC TTGACCGTGT GGCGACACAC ATAATGGATT ATCGCGACGA AGGTAACATT
AACTTCTTCG AAGGTAATTA TTCAGACTAC GAGAGCTGGT TAAAGCAAGA GTTTGGACAG
GATGTGGTTG AGCCTCACCG TTTGAAATAC AAGCGTATGG CTAAGTAA
|
|---|
| Protein sequence | MAQYVYSMHR VGKIVPPNRH ILKDISLSFF PGAKIGVLGL NGAGKSTLLR IMAGVDTEIE
GEARPQPGLK VGYLPQEPQL DESKDVRGNI EEAVADVKHA LTRLDEVYAA YAEADADFDA
LAKEQGELEA VIQAKDGHNL ENALERAADA LRLPAWDADV SKLSGGERRR VALCRLLLEK
PEMLLLDEPT NHLDAESVAW LERFLHDYEG TVVAITHDRY FLDNVAGWIL ELDRGEGIPW
EGNYSSWLEQ KENRLEQEER TETARMKSMK QELEWVRSNP KGRHAKSKAR MARFEELSTS
DYQKRNETNE LFIPPGERLG DKVIEVSNLK KSYGDRVLID DLTFKVPKGA IVGIVGPNGA
GKSTLFRMLT GAEQPDSGTI DLGDTVQIAA VEQFRDHMNE DNTVWKEISD EQDIIRIGNF
EINSRAYCSR FNFKGTDQQK FIKDLSGGER NRVHLAKLLK AGGNVLLLDE PTNDLDVETL
RALENALLEF PGCAMVISHD RWFLDRVATH IMDYRDEGNI NFFEGNYSDY ESWLKQEFGQ
DVVEPHRLKY KRMAK
|
|---|
| |