Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | MADE_02941 |
Symbol | |
ID | 6778726 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Alteromonas macleodii 'Deep ecotype' |
Kingdom | Bacteria |
Replicon accession | NC_011138 |
Strand | - |
Start bp | 3186481 |
End bp | 3187848 |
Gene Length | 1368 bp |
Protein Length | 455 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 642756390 |
Product | HlyD family secretion protein |
Protein accession | YP_002127231 |
Protein GI | 196157742 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.107369 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATTTTAA AAAGTGGTGG TGAGAAAAAA GACTGGCTTC AACGATTAAT GCGCGGGTGG CTTGCGCCAC CTCCGGGGCA AGATTGGGTG TTAGAAGCCG AGTGGTCACG GATTATGCAA ACGCCAGTAA AGGCAAAGGG GCTATTGTAC CTCGTATCCA TCGTACTTTT TCTTTTAGTG GTTTGGTCGT ATTTTGCCGA AATCGACGAG GTGGCAAAAG GCGACGGGAA GGTTATATCG TCTCAACAGC TTCAGGTGCT GCAATCGTAT GATGGCGGAA TTGTTCAAGA CATTTTAGTG GCAGAGGGGC AAACCGTAAA AGCGGGGCAA GTTTTGCTTA GGGTTGACCC GACGCGATTT CTATCCAGCC TTGAAGAGAA CACCACACAA TTTGCTGCGC TCGCAGCAAA AGTGCAAAGA CTGTCGGCGC TTACTCAAGG TAAGGCACTG AGGTTTAATA AAGAGTTGCA AGAGCAGGCC CCCAGCATTA TCGAAAACGA GCGCAAGCTT TATAACTCGA ATCTGGCGGA GCTTGACGAA GTAGCCGCTG GCTCAGATTC ACGTATTATG CAGCGCCGCC AAGATGTGGA AGAGGAACGT GCAAACCTTT CCCAATATCA AAATGTACTG TCTCTAACGA GAAAAGAGTT ATCCGTTACA AAGCCGCTGC TTGCTTCAGG TGCCGTTTCG GAAATCGAAA TTCTCAGGTT AGAGCGACAA GTGGTAGAAC TTGAAGGCAA TATCACGAAG TCTAAGGTGG CCATCGAACG CGGACTTAAT GCCATCGAAG AAGAAATCAT AAAAAAGGAA GAAAGCCGAT TAAGATTGGT AAATCGTTGG AATCAAGAGC TTACTGATGC TACCGGCGAG ATGGCTACTT TGCAGCAATC CCAAACCAGC TTAGAGGATG TGGTATCACA AGCTGATATC AGATCACCCA TTAACGGCAC GGTTCAGCGG TTACTCATCA ATACGGTTGG CGGTGTTATA ACGCCAGGTA GTGCCGTGGT TGAACTTGTA CCCCAGGATG ACCAACTTAT CGTAGAAGCC AAAGTTTCGC CGAAAGACAT CGCGTTTATT CGACAAGGCC AGCCAGCTAT TCTTAAGTTC AGCGCTTACG ATTTTACCAT TTATGGTGGC ATGTCAGCAG AAGTACAACA TATTAGTGCC GATGCTATTA CTAATGATAA AGATGAAACT TACTACTTAG TAAGATTGGA AACAAAAAGG AGCATAGCAG ATGAATCCCT CGACATTTTG CCGGGGATGA TAGTTCAGGT TGATATATTG ACGGGGAAGA AAACCGTGCT TAATTATATA TTATCGCCAT TGTTCAACGT AACAGCCTCT GCGCTGAGGG AGCGTTAA
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Protein sequence | MILKSGGEKK DWLQRLMRGW LAPPPGQDWV LEAEWSRIMQ TPVKAKGLLY LVSIVLFLLV VWSYFAEIDE VAKGDGKVIS SQQLQVLQSY DGGIVQDILV AEGQTVKAGQ VLLRVDPTRF LSSLEENTTQ FAALAAKVQR LSALTQGKAL RFNKELQEQA PSIIENERKL YNSNLAELDE VAAGSDSRIM QRRQDVEEER ANLSQYQNVL SLTRKELSVT KPLLASGAVS EIEILRLERQ VVELEGNITK SKVAIERGLN AIEEEIIKKE ESRLRLVNRW NQELTDATGE MATLQQSQTS LEDVVSQADI RSPINGTVQR LLINTVGGVI TPGSAVVELV PQDDQLIVEA KVSPKDIAFI RQGQPAILKF SAYDFTIYGG MSAEVQHISA DAITNDKDET YYLVRLETKR SIADESLDIL PGMIVQVDIL TGKKTVLNYI LSPLFNVTAS ALRER
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