Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | MADE_02732 |
Symbol | rnfD |
ID | 6775223 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Alteromonas macleodii 'Deep ecotype' |
Kingdom | Bacteria |
Replicon accession | NC_011138 |
Strand | + |
Start bp | 2976952 |
End bp | 2977980 |
Gene Length | 1029 bp |
Protein Length | 342 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 642756178 |
Product | electron transport complex protein RnfD |
Protein accession | YP_002127022 |
Protein GI | 196157533 |
COG category | [C] Energy production and conversion |
COG ID | [COG4658] Predicted NADH:ubiquinone oxidoreductase, subunit RnfD |
TIGRFAM ID | [TIGR01946] electron transport complex, RnfABCDGE type, D subunit |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCGCATGG TGATATACGC CATGCTACCA GGCATGATTG CGCAATCCTT CTTCTTCGGC TGGGGCATGC TGATACAAGC ATTTATTGCT GTAGTGAGCG CATTATTAAT CGAGGGCGTT ATATTATTTT TAAGAAAACG TCCTATTGAG CGCACGCTAA CAGATTACAG CGCAGTATTA ACTGGGCTAC TAATAGCCAT CAGTATCCCA CCTACCCTGC CTTGGTGGAT GACGGTAACT GGCGTATTCT TTGCCATCGC TGTGGCTAAG CAAGTTTATG GCGGACTCGG GTTTAATATT TTTAACCCTG CGATGATTGC TTACGTCGTC TTACTCATTT CTTTCCCAGC CGCTATGAGT TTATGGCTGC CACCGGCGAC ACATGCGGGC ATAACGCCAA GCTTCCTCGA TTCGGTATCG CTTATTTTCA CCGGTTTTAC CACCAGCGGC TACGATGTTA CTCAGCTTAA AACCATCGCA GATGGGGTTA CGATGGCGAC GCCGCTAGAC ACATTAAAGA CAGATTTAAC ACAAGGCGTT ACCTATACAG AGTCATTGAG CAAGCCAATT TTTAACGGCG GATTTTTTGA CGCTGCTGGC GCAGGGTGGG GAATCGTTAG CATTGCCTAT CTATTAGGTG GACTGTATTT GTGGAAAACC CGCGTAATTA GCTGGCATAT TCCAGGCGGC ATGCTTATAA GCGTAGCTGT GTGCGCATCA TTACTTCATT TAGTTAACGC CGATTACTAT GCCTCGCCCT TGTTTCATTT ATTCAATGGC GCAGTGATGG TTGGTGCATT TTTTATTGCA ACCGACCCTG TATCAGCATC GACCACACCG AAAGGCAGAA TCATCTTTGG AGCCGCCATT GGTTTTTGGG TTGTGATTAT TCGTACTTTT GGCGGGTATC CCGACGCTGT GGCCTTTGCG GTTATTATTA TGAATATGGC CGTACCTCTT ATCGATTATT ACACCCGCCC GCGGGTATAC GGGAAAAATG TGAGCAAAGG TCGAGGTAAG CCGCAATGA
|
Protein sequence | MRMVIYAMLP GMIAQSFFFG WGMLIQAFIA VVSALLIEGV ILFLRKRPIE RTLTDYSAVL TGLLIAISIP PTLPWWMTVT GVFFAIAVAK QVYGGLGFNI FNPAMIAYVV LLISFPAAMS LWLPPATHAG ITPSFLDSVS LIFTGFTTSG YDVTQLKTIA DGVTMATPLD TLKTDLTQGV TYTESLSKPI FNGGFFDAAG AGWGIVSIAY LLGGLYLWKT RVISWHIPGG MLISVAVCAS LLHLVNADYY ASPLFHLFNG AVMVGAFFIA TDPVSASTTP KGRIIFGAAI GFWVVIIRTF GGYPDAVAFA VIIMNMAVPL IDYYTRPRVY GKNVSKGRGK PQ
|
| |