Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | MADE_02531 |
Symbol | |
ID | 6777026 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Alteromonas macleodii 'Deep ecotype' |
Kingdom | Bacteria |
Replicon accession | NC_011138 |
Strand | + |
Start bp | 2751431 |
End bp | 2753365 |
Gene Length | 1935 bp |
Protein Length | 644 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 642755970 |
Product | diguanylate cyclase/phosphodiesterase |
Protein accession | YP_002126821 |
Protein GI | 196157332 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2200] FOG: EAL domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.419727 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGCTAA CTAATCAAAC TAATTGGGGT ATTGTTGCCC TTTTGTTTTT AGCGTTTACT GCATTGTCTG TCGCCGAACT ACGTGAGTTA CAATTAAACA CGTCTGAGGC GGTCACGCTA CAGGCTGAAA AAAGCGCGGC AAATTATAGA AAAAACATTG ATCAGCTCTC CTCTCTGTCA CCGCAGACAG AGGAGCTAGT CCTTAGCACC CTTCTAGAAA GTACAGTATC GCAGCCCCAT ATATCTTACG CCGCAATTGT TGACGCAAGC GGTAGTGTGG TAGCCAAAAG AGAAGCGGCA GTTCAGAACG CTGTACCATC GTGGTTCACG TCAATCGATT CCAATTCAGA ATTGGAAAAA CGCGTACCTT TAGGTGATAG TCAGCGCGCG CTCGTACTCA CATCAAATAA GGTTGAGGTA TACACCAGGT TCACTAACGT ACTACTAAGG AATATTATCG CCTTTGTCGC GCTTTCACTG CTTGTTTCAT TGTTGGTTGC AGTAATGAAT CGACGATTTA AGCGACCTAT CGAAGATACC GTTAGAAAAC TTAACGACAT GGGGAGCCAT AATTTCACGT CACCCCAAGT GAGTGCCTCT TCTGGCGACT GTGAACAGTT GACAAGTACC GTTAATACCC TTTCAAGCAC GCTAGCCTCG AAGTTCGATG AACTTACACG CCAGTCTGAG CTATTTAAAA AAGAAGCGAG CAAAGATTCA CTAACTAAAC TAGCCAACAG AGGGGCGTTT GAGCGCCACA TGCGTGCGCT ATTAAACGAA AACGCAACCT CACAAGAAAA AGAGCTTATT ATTGTACGGC TAGCGCAACT GGCCAGTATT AATACCAAGT TAGGTATGGT GCCGGGTGAT AACTATGTTA AAGCGATAGC GAACATCTTG GTTGAAGAAA CCAAAAACAA CAGTAACGTG CGCTTTGTGT TTCGATTGAC TGGCGGAGAT TTCGCATTAA TTTGCGAGGC CATGGAAAAG CCAGTAAGAG ATCTCATGCT GACTAACATA TCAAAACAAT GCGCTAGCGC CTCGCCATTA CGCGATGGCA CCAAAGCCAC GTATATCGGT ATTACTCGCT TTACCGGCAC TATGTCTATG CCGCAAGTCA TGGAAAGTGT GGATAGTGCG CTTATCGCTG CCATGAAAAC CCAAAGCGGT TGGGAGTTGG CCTCGGAAAT ATCTCACGTA CACAGCAATA CGCGATGGCG CGAACGACTT AACTATATTG TCGCTCAGCA GTATGCCGAC ATTATGATTC AGCCGGTTAT GAATATAGAG CAAAATATTC CCGCTTACTA TGAGACATTT GGGCGCTTTA AAGACAAAGA TACCAACGAA GTCATACCCA TGTCGCAGCT TATCCCTGCT TCTGAGCGAT TAGACCTAAT ACCACAAGTC GACAGACTGG TTACCAGCAT CGTGTTTAAA AAGATGGAAG TGACCTCTCA GCAAGTCGCC GTCAATTTAA GTATTACGTC AATTGCCAAT GGTGAATTTA GAGCTTGGTT GGTTAACGAA TTAACCCAGC GACAAGCGCT GTGCCCTAGG CTTCTTTTCG AAGTTGAAGA TGCCGCGCTA ATACAGTATC GAGACTACGC GGAATCGCTG TGCAGACAAT TGATCAACCT GGGTTGTCGA GTCACTATTG AACACTTTGG CGATCACTTT GCATCCCTCT CTGGCCTACG CGCGATTAAA CCGCAGTTTG TTAAAATTTC CGGAAGACTG ACCCAAGGTA TTCATACCAA TAAAGAAAAC CAGCTGTTCG TGTCTAGCCT TATCAATATA GCGACTGGCC TGAATATAAA AGTAATTGCA GAAATGGTGG AAACCGAAGC CGAATCTGTG GCTTTGAACA AGCTAGGTGT AGAACATCAG CAAGGCTATT ATTTTGCTAA ACCTGCACTT TGGAATGTGT ATTAA
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Protein sequence | MKLTNQTNWG IVALLFLAFT ALSVAELREL QLNTSEAVTL QAEKSAANYR KNIDQLSSLS PQTEELVLST LLESTVSQPH ISYAAIVDAS GSVVAKREAA VQNAVPSWFT SIDSNSELEK RVPLGDSQRA LVLTSNKVEV YTRFTNVLLR NIIAFVALSL LVSLLVAVMN RRFKRPIEDT VRKLNDMGSH NFTSPQVSAS SGDCEQLTST VNTLSSTLAS KFDELTRQSE LFKKEASKDS LTKLANRGAF ERHMRALLNE NATSQEKELI IVRLAQLASI NTKLGMVPGD NYVKAIANIL VEETKNNSNV RFVFRLTGGD FALICEAMEK PVRDLMLTNI SKQCASASPL RDGTKATYIG ITRFTGTMSM PQVMESVDSA LIAAMKTQSG WELASEISHV HSNTRWRERL NYIVAQQYAD IMIQPVMNIE QNIPAYYETF GRFKDKDTNE VIPMSQLIPA SERLDLIPQV DRLVTSIVFK KMEVTSQQVA VNLSITSIAN GEFRAWLVNE LTQRQALCPR LLFEVEDAAL IQYRDYAESL CRQLINLGCR VTIEHFGDHF ASLSGLRAIK PQFVKISGRL TQGIHTNKEN QLFVSSLINI ATGLNIKVIA EMVETEAESV ALNKLGVEHQ QGYYFAKPAL WNVY
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