Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | MADE_02407 |
Symbol | |
ID | 6776803 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Alteromonas macleodii 'Deep ecotype' |
Kingdom | Bacteria |
Replicon accession | NC_011138 |
Strand | - |
Start bp | 2607589 |
End bp | 2609100 |
Gene Length | 1512 bp |
Protein Length | 503 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 642755846 |
Product | GGDEF domain protein |
Protein accession | YP_002126697 |
Protein GI | 196157208 |
COG category | [E] Amino acid transport and metabolism [T] Signal transduction mechanisms |
COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGATTGCAT TTTTATTATT TACGCTTAAT ACTTCGCGGT TGTCTTTGAG CTCGTTAACT GTTTTGGGTG TGTGGTTGAA AAAAATAAGA AAGTATCTTT TTGGTGTGGT GTTGTTTTTA GGCGCGAGTG TTTTCAGCGC TATTCTAAAA GCGGGCCCCG AACAACAAGC CGCTTTTACT CCATCTGAGG AGATCACTTA CTGCATTGAC CCCAACTGGG CGCCATACGA AGCGATAAGA AATGGTATTC ATGTTGGCAT CTCAGCCCAA TATATGCGGC TGATTGCCGA GATTGCTGAC CTTGAATTCA CGCTTGTGCC TACAGAAAGT TGGCAACAAA GCCTAGAATA TGTTCAGCAG GGGAAGTGCA AAGTGATCCC TATGCTCAAT ACCTCAGATT ATAGAAAGCA GTTTCTAGAT TTCAGTATTC CTTATTTTGA AGCGCCTAAT GTGCTGGTGG CGAAGGCAGG TACGCCTATG CTTCAAGGTT ATTCCGGCGT AGGTAATCGC ACGGTAGGCA TAGTTCAAGG TTATCGACAA GTAGAGTATA TCTCCCGCCA CTACCCAGGG TTACGGTTGA AACTAATGCC TTCGGAAGAA GAAGGGCTGA AACAACTGGC AAATGATGAG TTTGATGTTA TGGTCGGCTC CTTGATGAGC GTAAATATGC ACATTAACAA CTTAAAATTA AAAGACATTA ACATTGTCGG CTATGCTGAG CCTTTCGACT CTTTGGCCTT TGGGGTAAAT AAATCGTTCG GGCACTTGGT TGATAAGCTC AACTTTGCCA TCGAGCGGAT CCCTGAATCT CGGAAAGTGG AAATATACAA ACAATGGAAT AATGTTCAAA TACGCTACAG TCGTAATTAT ACCGTGATGA TATTGAGCAC TATTATTATG CTAATAGGGC TGTTGTGGTT AATATCGAGG AACCGTCATG TAGGTGCCTA CAAGCGTATT ATTAATCAGA AAAATGAAGA AATAAGCGCG CTACAGGCCA CCTTGCTGGA AAAAAACAGA ACCCTTGGCT TTCTTTCTGC CCATGACACA ATTACAGGGC TGTACAATCG CAATCATATG ATTCAGCGAG CGGAAGAGGA AATCTCTCGC TTCCAGCGCT TTCAAACAAC GGCCTCGTTA ATTATTCTTG AGCTAACCCA CTCTCATGAC GATGGGCATT CGCTTGAAGC ATCATCGCTG GAAGAGCCGC TTAAAGTGGT TGCCACCCAA TGCTTAAATA CCGTAAGAGA GGTGGATGTG GTGTCTCGCT TTAGTGGTGA GCAATTTATT ATACTTTGCC CACAAACCGA GGTAGGTGCT GCAAAGATAC TCGCAGATAG ATTACTTAAA TGTGTAACGA GTCATTACCT TCTAACCGAT AATTTTAAAG TTGCGATAGG CATGTCTGAG CTTAAGCAAT CTGAAGAGTT TTCCGACTGG ATGGAGCGTA CCATGAAAGC CCTGTATCAA TCTAAGCGCC ACGGGTTTGG CAGTGTGAGC ATAGCGCCAT AA
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Protein sequence | MIAFLLFTLN TSRLSLSSLT VLGVWLKKIR KYLFGVVLFL GASVFSAILK AGPEQQAAFT PSEEITYCID PNWAPYEAIR NGIHVGISAQ YMRLIAEIAD LEFTLVPTES WQQSLEYVQQ GKCKVIPMLN TSDYRKQFLD FSIPYFEAPN VLVAKAGTPM LQGYSGVGNR TVGIVQGYRQ VEYISRHYPG LRLKLMPSEE EGLKQLANDE FDVMVGSLMS VNMHINNLKL KDINIVGYAE PFDSLAFGVN KSFGHLVDKL NFAIERIPES RKVEIYKQWN NVQIRYSRNY TVMILSTIIM LIGLLWLISR NRHVGAYKRI INQKNEEISA LQATLLEKNR TLGFLSAHDT ITGLYNRNHM IQRAEEEISR FQRFQTTASL IILELTHSHD DGHSLEASSL EEPLKVVATQ CLNTVREVDV VSRFSGEQFI ILCPQTEVGA AKILADRLLK CVTSHYLLTD NFKVAIGMSE LKQSEEFSDW MERTMKALYQ SKRHGFGSVS IAP
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