Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | MADE_02406 |
Symbol | |
ID | 6778004 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Alteromonas macleodii 'Deep ecotype' |
Kingdom | Bacteria |
Replicon accession | NC_011138 |
Strand | + |
Start bp | 2605735 |
End bp | 2607390 |
Gene Length | 1656 bp |
Protein Length | 551 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 642755845 |
Product | hypothetical protein |
Protein accession | YP_002126696 |
Protein GI | 196157207 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1315] Predicted polymerase, most proteins contain PALM domain, HD hydrolase domain and Zn-ribbon domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.122562 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATGGCG TAACAATAAG TTTCGATAAA TCTAGAACCT ATATCAACCT AATGCTCAAC CCGTCTGAAT TCACCTCAGA AGTAGACATA CGGGAAATAA AAAAGCAGTT AGAAAGCGGC GAAACCAAAC GTATTTACGT TTCAGAAAAA GCGCTCAAAT CTGCCTGTGA CACGGCCAAC CATTACTTTA AAACGGGTGA TGGGACTATC GTTCAAGAAC GAATTGGCGA ACGTAAAAAC GCGGAAGTAG AATTCCGTGT TCCTGATGAC GGCATGCACG CGAACCTTGT GCTCACTACT CCCTATGGCG GAAAGCTACC CGCGTTAAGC ACGATAAAAT CACTGGCAAT AAAAAATAGA GTCATCCGAG GTGTAAGCAC CAAAAAGATA GAATCTATGC TGAGTAATGC TAGGCGCGCT GAGCCCGGCA CCGTGCTGGA AGAAACTATC GCGAAAGGGC TTCCTGCTAA AAATGGCAAA AACTCTAAGT TCATTCCTCT TGTTCCTAAC GCCCTAGAAC GGGTGTTAAA GCCTCAGGCA GATGACGGCG AGCGCGTAGA CATGCGCAAC TTAGGCGAAA TTATTTGTGT AAAAGTAAAC ACGCCTGTGC TGCGTCGTAC CGCGCCAACC CAAGGTCGCT CTGGTTTCGA CGTAAAAGGC AATAAACTCC CTGCCGTCGC AGGCGAGTGG GTCGACTTTA AAATGGGAAG CGGAACCGTT GTGTCAGACG ACGATGCCAA CCTTTTGATG TCGGCCATTT CGGGTATGCC TAAGTATCGC GACCAAATTA TGAATATCGA TGACACCTTC ATCTGCAATG GCGTTAACGT GGGTACTGGG CATGTGAATT ACGAGGGAGC GGTACTTGTA AACGGCGATG TAACAGAAAA AATGCAGATT AAAGCGGCCG GTGATGTAAC CATAAATGGT TTTGTTGAGT CGGCGCATAT TGAAGCGGGT GGCGATATCA TTATCACCGA AGGCGCTATG GGTAAGGTGA ATGATTCTCA AGGCGAGTTC CAATGTAAAT TAGTCGCATC AGGAAGCATC CACGTGCAGC ACGGCCAGGG CATTGACATT CAATGCGGTG GAAACATTAC CGTAGGCAGG CAACTGGCCT ACAGCCGCTT GCGTTGCGGG GGAGCCGTTA TCGTAGGGCA AATTGACAAG CCTATGGGGA ACCTTTTTGC TTGCGATATA ATAAGTCAAG ATCGCGTGGA GGCAGGCACC CTAGGGGCCG TTTCCGGCAG TACGTTGAAA GTGGACTTTA GCCCGGGCTT TAATCAACTC CTTGAACGAA AAGACTCGCT AGATGAATTG CTACGCCAGA TTCGCGAGAA CAATTTAAAG CACAAAGAGA AAATAGCACT TATCCAAGGT AAGAAAATTC CAAAAGAACT TCGGCACAAA GCCGCTGAGG CTTTAGAACT TTTCAACAAT GAAAGCGCGC TGCTAGAGTG GCTTGAAAAT AAAGCCAATG ATGTGAAGTC GGCTAAAGAA AGCTACCAGT CCGACATTAA GCTTATCGCC AATAAACGGC TTTACCCTGG CGTATCGGCT AAGTTAAATA ACAGAAACTG GCGTTCAGAG CGTGAATACG ACCGTGCGCA AATACACTAC GACGCTCATC AATGGCACTA TGAGCCGTTG ATATAA
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Protein sequence | MNGVTISFDK SRTYINLMLN PSEFTSEVDI REIKKQLESG ETKRIYVSEK ALKSACDTAN HYFKTGDGTI VQERIGERKN AEVEFRVPDD GMHANLVLTT PYGGKLPALS TIKSLAIKNR VIRGVSTKKI ESMLSNARRA EPGTVLEETI AKGLPAKNGK NSKFIPLVPN ALERVLKPQA DDGERVDMRN LGEIICVKVN TPVLRRTAPT QGRSGFDVKG NKLPAVAGEW VDFKMGSGTV VSDDDANLLM SAISGMPKYR DQIMNIDDTF ICNGVNVGTG HVNYEGAVLV NGDVTEKMQI KAAGDVTING FVESAHIEAG GDIIITEGAM GKVNDSQGEF QCKLVASGSI HVQHGQGIDI QCGGNITVGR QLAYSRLRCG GAVIVGQIDK PMGNLFACDI ISQDRVEAGT LGAVSGSTLK VDFSPGFNQL LERKDSLDEL LRQIRENNLK HKEKIALIQG KKIPKELRHK AAEALELFNN ESALLEWLEN KANDVKSAKE SYQSDIKLIA NKRLYPGVSA KLNNRNWRSE REYDRAQIHY DAHQWHYEPL I
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