Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | MADE_02283 |
Symbol | |
ID | 6775402 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Alteromonas macleodii 'Deep ecotype' |
Kingdom | Bacteria |
Replicon accession | NC_011138 |
Strand | - |
Start bp | 2467972 |
End bp | 2468868 |
Gene Length | 897 bp |
Protein Length | 298 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 642755717 |
Product | pseudouridine synthase (makes pseudouridine2605 in 23 S RNA) |
Protein accession | YP_002126573 |
Protein GI | 196157084 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.268189 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACTGAAA AGTTGCAAAA AGTACTGGCT AACCAAGGGC TAGGCTCGCG ACGAGAAATG GAACGTTGGA TTGAGGAAGG CCGAGTATCG GTTAACGGTT CCGTAGCGAC ATTAGGTGAT AGAGTTGACC ACACTGCGCA AATTCGCGTT GATGGCCATC TTTTATCACG TCAAACCGAG CAGCCAATTT GTCGAGTGTT GATGTACAAC AAGCCAGAAG GTGAACTGTG TAGCCGTCAC GACCCAGAAG GTCGAGATAC GGTGTTTGAC CGTCTGCCGG CTATTCGTCT AGGGCGCTGG ATTACCGTTG GCCGTTTAGA CATGAACACC AGTGGTTTGC TTCTGTTTAC CAACGATGGT GAGCTTGCAA ACCGCTTAAT GCATCCTAAG TGCGAAGTAG AACGTGAATA CGCCGTACGT GTGTTTGGTG AAGTTTCGAC CAAGACACTA AACACACTTC AAAAAGGGGT AGAGCTAGAC GACGGTGAAG CCAAATTTCT AACAATATCG GGTACGCCCA CGCCACAGCA TGCTGAAGAA GAAAGCATGA ACCGTTGGTT CAACGTGACC TTGAAAGAAG GGCGTAACCG TGAAGTTCGC CGTCTTTGGG AATCACAAGG CGTACAAGTT AGCCGCCTTA TCCGTGTTAA GTACGGCCCA ATCGAGCTTC AAAAACGTCT GCCGCAAGGT GCGTGGGTTG AGCTAGGGCT AGAAGACGTA AACGCGCTTC GCAATCATGT ACAGCTGCCT GATGAAACGC AGACTATGGT GAACGTTCGA CAAGGTAAAC TCGACCACGC TCGTTTAAGT CGTATGCGCC GCTCAGTGAA AAAGCATAAA GTTCGCAAGC AACAGGGCCT TAATAAAAGA GCGGGTCGCC CAGCAAAGCG CAAATAA
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Protein sequence | MTEKLQKVLA NQGLGSRREM ERWIEEGRVS VNGSVATLGD RVDHTAQIRV DGHLLSRQTE QPICRVLMYN KPEGELCSRH DPEGRDTVFD RLPAIRLGRW ITVGRLDMNT SGLLLFTNDG ELANRLMHPK CEVEREYAVR VFGEVSTKTL NTLQKGVELD DGEAKFLTIS GTPTPQHAEE ESMNRWFNVT LKEGRNREVR RLWESQGVQV SRLIRVKYGP IELQKRLPQG AWVELGLEDV NALRNHVQLP DETQTMVNVR QGKLDHARLS RMRRSVKKHK VRKQQGLNKR AGRPAKRK
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