Gene MADE_02256 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMADE_02256 
Symbol 
ID6779214 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAlteromonas macleodii 'Deep ecotype' 
KingdomBacteria 
Replicon accessionNC_011138 
Strand
Start bp2419428 
End bp2422448 
Gene Length3021 bp 
Protein Length1006 aa 
Translation table11 
GC content46% 
IMG OID642755690 
ProductMultidomain protein, contains Na+/proline symporter PutP-like domain, sensory histidine kinase and receiver domain 
Protein accessionYP_002126546 
Protein GI196157057 
COG category[E] Amino acid transport and metabolism
[R] General function prediction only
[T] Signal transduction mechanisms 
COG ID[COG0591] Na+/proline symporter
[COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.371064 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTAAGTA TATGGACGGT TGGCACTATC GTTGGTTTTT ACCTTCTCGC GCTTTTTGCT 
TTGGCATTTT GGGGCGACAG GCATTTACGC GATAACCGGC AGCACCCTGT TCTCTATAGC
CTTGGTTTAG GTGTGCACTG TACCTCTTGG GCGTTTTTCG GCACTACATC GCAAGCGGCA
CAATACGGCT GGGCAGTTAT CCCTACGTAT TTGGGTATTA CGTTGACCAT GGCATTTGCC
TTTCCCGTAA TACTTCACAT AAGTAGACTA TGCCAGCAAC ACAACATCAG CTCGCTGGCT
GACCTCATAT CATTGAAGTA CCAACACTCT CATTTAATTG CCGCTCTTAT CACTTTACTG
TGTTTTTTTG GTGTTGTGCC CTATATAGCA CTTCAGCTAG ACGCTATTAC AAAGTCTATT
AATTTACTCA CTGGTGAGCC CCAAACCACC ACACCTTGGT TAAGCATTTA TGTGGCCGGT
TTGCTCGCCA TATTTGCTAT AACCTTCGGC ACGCGTACGC TGAATTTAAC TGATAAGCAC
CCCGGTTTGC TGCTTACTAT AGCATTTGAG TCAATTATTA AGCTTGTCGC CCTGTGGGCT
GTGGGTATTT TTGTTTGCTT CTTTTTATTC GATGGCGCAT TAGATTTAAT ATCTAACGCC
GCATCCAATG ACAGTGCTAG AGACGTCATT TATGCCGATA GCGCGCCATG GGTCTATTTA
TCACATGTAG CCCTTGGTGT TTGCTCTATG TTTGTACTGC CACGCCAATT CCATATGAAC
TTTGTTGAGC AGAACGGTGA GGGAGAGCTT AGAACAGCAA GGTGGCTATT TCCCCTCTAT
TTATTTGGAA TGACCCTTTT TATTATTCCT ATTGCACTTG CAGGAAAAAT GCTGCTGCCG
GTGGGTACAA GCTCTGATGC GTACGTGCTT GCCCTGCCTT TACATACTGA AAATATCGCG
CTGTCGTCCT TTGCTTTCAT AGGCGGTCTT TCTGCCACCA CCAGCATGGT GATTGTTGCA
ACTCTAGCCA TGGGCATAAT GATATCAAAC AATGTTGTTA CGCCGCTGTG GCTGAAAGCC
CGGTTAAAAA CGTCTCCAAA CCAGTCAATG CAACCAAGTA AGATCCTTTC TATACGTCGT
ATTACCGTAG TAGTCGTTCT TAGCATTGCG CTCTGGTATC ACCTTAATAT AAGTCAGGCC
GCGCCCTTAG TTAAAAGTGG TGTAATTGCC ATTGCGCTGT TAGCACAGTG CATGCCCGTG
TTAATGTTCG GAATCTATTG GCGGCGTAGC AGCAAAGCCG CTGCTGTATC CGCTTTATTA
GTGGGTTCTA CGTGCTGGGC GATATTTCTA CTCTACCCCA GCCTGCTTTC TAGCTACTAT
TTTAACCCTG CTCCAACCGA CCAAGCGCTT GGGCTAGGAT TTGCCTTCTC GTTACTGGCT
AATTGCATTA CATTTGTTGT TGTGGCGTTC ATTTCTTCGC GACACGGGAC AAACGAAACC
GACACGACAC TGCAAAGCAA TTCGCCCCCC AATTTACTCG TTAAAGTGCG TGACTTAATG
GCGTTAACGG AACGGGTACT CGAAAGCGCC ACCCATTCCC AGCTTGTAAA GCAACTTACG
ATTGATGTTG AGCGTGCATC AAGCAGCGGC TATGCCAGTC AGGCCCTTAT CGATAGGGTG
AATAAATTGC TTGCCGCCCA AGTGGGAGCG CCCAGTGCTC GAATATTACT AGGCGCTATC
GCGGATACTG GTAGAGCTGC CTTGCCGGAG TTAGTTGACT GGGTAGAAGA AGCAACACAG
TCTTTTCAAT TCAATCACGA GGTACTTCAA TCATCGGTAC AAAATATTGA ACAGGGAATC
AGTGTAGTTG ATGACAAGCT CCAATTACTG GCATGGAATG ATAGATACGT AGAGCTTTTT
GCTTACCCTA AAGGCTTTTT AAAAGCAGGT ATGCCGATTA CCGATATACT GAGTTACAAC
GCTAAGCGGG GCTTGTTCAA CCCCTCCTCC ATTGATAAAC GGGTGAGCTA TATGCGTGAG
GGTACCCGCC ACAAGCATAT CCGCAAGCAG CCTGATGGAA AAGTGATAGA GCTAAACGGT
GCGCCCCTTC CTGGTGGCGG CTACGTGACT ACCTATAGCG ATATCACTGA ATACATGGCA
ATTCAAAAAG AATTAGAAAG TGCAAAAGAA GATCTGGAGG AAAGAGTTGC TCAACGCACT
GCAGAACTAG AGGAAGCTAA GCTTCAGGCT GATAAAGCCA ACGAAAGCAA AACCAAGTTT
TTGGCGGCAG CTGGCCACGA TCTCATGCAG CCTTTTAACG CCGCCACATT ATTTGCCAGC
ATGCTGAGCA AAAAAACGCA AGGTAGCGAA CTGGCTACGC TGTCTGAAGG CGTGGTGAAT
TCGCTAGATA ACGCTCAGAG CTTACTTTCT ATGTTGCTGG ATATGACAAA ATTAGATGCT
GGCGTTCTCA TACCGCAAAA GACTGAATTT GCCATCGATG AGATGCTATC TTCGTTGGTA
CAAGAGTTCA GTGTTATTGC AAAGCAAAAA GGGGTTACGC TGAGGTATGT ACAAACGAAT
GTCTTGGTGT ATTCAGACAA AAACTTGCTG CGACGTGTGC TGCAAAACTT ATTGTCCAAC
GCGGTTCGCT ATACCCCTAA AGGCAGCATT TTAGTGGGCG TTAGGCGCAT ACAAACTGCA
AATACCGAGA AAAAAATAAA GCTTTGTGTT TACGATACCG GTTTAGGTAT TGCTGCACAC
CAACAGCATG AAATTTTTAG TGAGTTCCAC CAGCTGGATA ACAACAAAGG TGAAGGGATT
GGATTAGGCT TAACTATTGT AGAGAAAATT TGTCGATTAC TCGGCCATCA AGTAGGGCTA
ACCTCATTAC CGGGAAAAGG TAGCTGTTTT AGTGTTACAG CAACACGCAT AATGCATACG
AGTGGTAATT CAAAACAAGT GCTGAAAACG GAAAGCTATA ACAACGGCGT TTTTCAAGGT
AGTTGTCGCC TGAGCTGTTA A
 
Protein sequence
MLSIWTVGTI VGFYLLALFA LAFWGDRHLR DNRQHPVLYS LGLGVHCTSW AFFGTTSQAA 
QYGWAVIPTY LGITLTMAFA FPVILHISRL CQQHNISSLA DLISLKYQHS HLIAALITLL
CFFGVVPYIA LQLDAITKSI NLLTGEPQTT TPWLSIYVAG LLAIFAITFG TRTLNLTDKH
PGLLLTIAFE SIIKLVALWA VGIFVCFFLF DGALDLISNA ASNDSARDVI YADSAPWVYL
SHVALGVCSM FVLPRQFHMN FVEQNGEGEL RTARWLFPLY LFGMTLFIIP IALAGKMLLP
VGTSSDAYVL ALPLHTENIA LSSFAFIGGL SATTSMVIVA TLAMGIMISN NVVTPLWLKA
RLKTSPNQSM QPSKILSIRR ITVVVVLSIA LWYHLNISQA APLVKSGVIA IALLAQCMPV
LMFGIYWRRS SKAAAVSALL VGSTCWAIFL LYPSLLSSYY FNPAPTDQAL GLGFAFSLLA
NCITFVVVAF ISSRHGTNET DTTLQSNSPP NLLVKVRDLM ALTERVLESA THSQLVKQLT
IDVERASSSG YASQALIDRV NKLLAAQVGA PSARILLGAI ADTGRAALPE LVDWVEEATQ
SFQFNHEVLQ SSVQNIEQGI SVVDDKLQLL AWNDRYVELF AYPKGFLKAG MPITDILSYN
AKRGLFNPSS IDKRVSYMRE GTRHKHIRKQ PDGKVIELNG APLPGGGYVT TYSDITEYMA
IQKELESAKE DLEERVAQRT AELEEAKLQA DKANESKTKF LAAAGHDLMQ PFNAATLFAS
MLSKKTQGSE LATLSEGVVN SLDNAQSLLS MLLDMTKLDA GVLIPQKTEF AIDEMLSSLV
QEFSVIAKQK GVTLRYVQTN VLVYSDKNLL RRVLQNLLSN AVRYTPKGSI LVGVRRIQTA
NTEKKIKLCV YDTGLGIAAH QQHEIFSEFH QLDNNKGEGI GLGLTIVEKI CRLLGHQVGL
TSLPGKGSCF SVTATRIMHT SGNSKQVLKT ESYNNGVFQG SCRLSC