| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_01962 |
|---|
| Symbol | |
|---|
| ID | 6776265 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alteromonas macleodii 'Deep ecotype' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011138 |
|---|
| Strand | - |
|---|
| Start bp | 2117708 |
|---|
| End bp | 2118490 |
|---|
| Gene Length | 783 bp |
|---|
| Protein Length | 260 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 642755398 |
|---|
| Product | tRNA-(MS 2)O6-A-hydroxylase |
|---|
| Protein accession | YP_002126260 |
|---|
| Protein GI | 196156771 |
|---|
| COG category | [F] Nucleotide transport and metabolism
[J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG4445] Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0617896 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGTAA TTTCTCCTTC TGAAGTAACG TCTCTTCTTT CACCCGTCAA TGCGTTTTTA
CATTGCGAGA CCCCGCAGTC GTGGATAAAT GAAGCACAAA AAGAAGAAAA CTTACGGGTT
ATTCTTACTG ATCACTTAAT TTGTGAGCTT AAAGCGGCAC AATCGGCCAT GTACCTGTTA
CGCCGCTATG TGGCCGACGA GGAAACCAGT AAAGTACTAC TGGGGTGGCT TAAGCCTTAT
GAAGATTTCA CGTATCGCCA TGAAGGCGAT TGGCAATCCC TAAACACTAA GCACCTTTCA
AAAAGTGTGT TCAATGTAGA AGGCCTCGAC CCGTTCAAAA AAGACATGCT CGATAAAATG
GTAATGCTGA TAAAAGAAGA GCTACATCAT TTTTATCAAG TGCTAGAAAT TATGCACGAG
CTAGGTTTCG AATATAAATC GGTGACATCT AGCCGTTATG CCAACGGCTT ACTCCGTCAC
GTACGCACTT ACGAACCAGA AAAACTTGTC GACAAGCTCA TTTGTGGTGC CTATATCGAA
GCGCGCTCAT GCGAGCGTTT TGCCAAGCTA GCCCCGCATG TTTCCGAAGA CTTAGGTAAG
TTTTATGTGT CACTGCTGCG CTCAGAGGCA CGCCATTTCG AAGATTATTT AACCTTAGCC
AGTCAGATAT CTAAAACCGA CATCAGCGAG CGCATTAACC ACTTTGGCAG CGTAGAAAAA
TCATTGATTG AAAGCGACGA TAATGAACTG CGCTTCCATT CAGGTGCACC AGACTTTACT
TAA
|
|---|
| Protein sequence | MSVISPSEVT SLLSPVNAFL HCETPQSWIN EAQKEENLRV ILTDHLICEL KAAQSAMYLL
RRYVADEETS KVLLGWLKPY EDFTYRHEGD WQSLNTKHLS KSVFNVEGLD PFKKDMLDKM
VMLIKEELHH FYQVLEIMHE LGFEYKSVTS SRYANGLLRH VRTYEPEKLV DKLICGAYIE
ARSCERFAKL APHVSEDLGK FYVSLLRSEA RHFEDYLTLA SQISKTDISE RINHFGSVEK
SLIESDDNEL RFHSGAPDFT
|
|---|
| |