| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_01719 |
|---|
| Symbol | |
|---|
| ID | 6776216 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alteromonas macleodii 'Deep ecotype' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011138 |
|---|
| Strand | + |
|---|
| Start bp | 1844092 |
|---|
| End bp | 1846113 |
|---|
| Gene Length | 2022 bp |
|---|
| Protein Length | 673 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 642755152 |
|---|
| Product | diguanylate cyclase/phosphodiesterase |
|---|
| Protein accession | YP_002126017 |
|---|
| Protein GI | 196156528 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.513867 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTATTT TGGCCACATC AATAGCTATT GTAAATAAGT TAGAACACAG TGAGTCAGTG
ATGACTGTTG TCGCGGATAA TACGGCCGCG CTAAGTAACT CACTTGCGTT ACAGCTTTCG
ATTTTAATGC AAAAAAATCC AGGTAATAAT GCGTTACTTT CTTCTGTATT CCAACCTGTT
AAAGAACACC CATATCTTCT TAGTGCAACC CTTTACGATA ATGATTATAG GGTTATCTCG
ACAGTACAAC CCAAGCAATC ATTAAAATTT GACGATGAGG CAGTACCTAC CTCTCCAGAG
AATGTACCTT TTGGTATTGC ACAGTATGAA GACGTGATCA CCGCACATCA AATCATTGGC
AGTAGCCTTT ACCCAATGGG GCACCTGGTT ATTTACGTTG ATACCAATGA AGTTAAGGCT
TCAAACTCAA CTCGCCAACT TATTAAGCAA GTGCCATTTA TTTTAGCATT CTGGCTATTG
TGTACGGGAA CATGTTTCTT TATTTTCTAC CGTCTTCTCT CACCTTTAGC ATCGTTGGGG
AAATTTACCC AAGAGGTTTA TGAATCAAAA GATTACGCGC TTAGAAACTC GATAGAGTCT
TCTAACGAAG TCGGTCAGCT TGCCCGTAAC ATCAATAGCT TGCTGGATGC TATTGAAGTG
GAGCTGCTGG TTAACTTTGA ACAAAAGCAA ACCTTGGTGG ACCAGCAAGA GACCATGTCG
AGGCTGGCTA ATTTTGATAG CTTAACCGGA TTGCCTAACC GACAGTTCGT ACTTGATAAC
TTGCGTTTAG AGTTAGCAAG AGCGAAAAGA AATGACGAAG ACTTATTGCT TCTATTTTTT
GATTTAGATG GCTTTAAGGG GATCAATGAC TCGTTAGGCC ATGAAACTGG CGACCTTATT
CTTATCGAAG TGGCAGATAG GGTGAAGTGT TTATTGCGTG ATGGCGACCT GTTTGCTCGT
TTAGGGGGCG ATGAGTTTTT AGTGCTTCCT GATAGAGATG CTTCCACCGA ACAAGCGCAA
CGTCTGGCTA CCCGATTAAT CACCGCTTTT GATGAGCCTT TTGAGCTTCG TGGGCTGTCA
TTGACCGTAG GTCTGAGCGT GGGTATAGCT ACAGCGTCAG ATGCAGGCTA TGACCTAAGT
GAGCTTATGA GCAATGCAGA TTTGGCCATG TACCGGTCGA AGGCCAGGGG AAGAGGCAGT
TACACGTTGT TTACGCCAGA TATGGTCGAG TCTCATAAGC GTAAGCTTCA TTTGGCAAAC
GGCATTGAAC AAGGACTCTT AAACGATGAG TTTGTTGTTT ACTACCAAGT TAAAGTGAGT
AATGAAGGTG AGGTAGTTGG CGTTGAAGCA TTAATCCGTT GGGAACACCC CGAGTTTGGG
CTGGTTATGC CCAATGAGTT TATACCCATT GCAGAGCAAG GGGGCAAAAT AACGGCCATA
ACCCGCTGGA TCATCAAGCA AGTTTGTATT GATATGCCAG ATTTAAAGCA ATGGGCTTTA
ACACCATTCA GAGCGTCGAT TAACTTATCG GGGCACGACC TGAGGAGTAA TCAACTTTTT
GACTATATCT ACAATACTTT CAATTTATAT GACATAAATC CAGAAAACGT TGAGTTTGAG
GTTACCGAAA GCGCTTATCT TGAAAATTTT GCTTTATCCA ATAAGTTTTT CAGACGAATA
TCGAATATGG GGTGTGCTAT CGCCCTAGAT GACTTTGGTA CAGGGTATTC GTCGTTAAGT
TACCTCACTC AAATTAATAT CGATACATTG AAAGTAGACC GGCAATTCGT TACGGAACTT
CAAACTTCCG AGCGCAGCCG ACTGGTTACC GGTGCAATTA TCGATCTTGC AAAGCGCCTT
TCTCTTTCTG TTTGTGCTGA AGGTATAGAA AACCATGAAC AGTGGGATTA CCTCAGAGAA
CACGGGTGTG ACAATGTTCA AGGCTTCCTG TTTAGCAAGC CTATCCCTCT TTCTGCGCTC
GTGCGTTCTC CCTGCCGTTA CGATGCCTCG GCGATGGCCT AG
|
|---|
| Protein sequence | MAILATSIAI VNKLEHSESV MTVVADNTAA LSNSLALQLS ILMQKNPGNN ALLSSVFQPV
KEHPYLLSAT LYDNDYRVIS TVQPKQSLKF DDEAVPTSPE NVPFGIAQYE DVITAHQIIG
SSLYPMGHLV IYVDTNEVKA SNSTRQLIKQ VPFILAFWLL CTGTCFFIFY RLLSPLASLG
KFTQEVYESK DYALRNSIES SNEVGQLARN INSLLDAIEV ELLVNFEQKQ TLVDQQETMS
RLANFDSLTG LPNRQFVLDN LRLELARAKR NDEDLLLLFF DLDGFKGIND SLGHETGDLI
LIEVADRVKC LLRDGDLFAR LGGDEFLVLP DRDASTEQAQ RLATRLITAF DEPFELRGLS
LTVGLSVGIA TASDAGYDLS ELMSNADLAM YRSKARGRGS YTLFTPDMVE SHKRKLHLAN
GIEQGLLNDE FVVYYQVKVS NEGEVVGVEA LIRWEHPEFG LVMPNEFIPI AEQGGKITAI
TRWIIKQVCI DMPDLKQWAL TPFRASINLS GHDLRSNQLF DYIYNTFNLY DINPENVEFE
VTESAYLENF ALSNKFFRRI SNMGCAIALD DFGTGYSSLS YLTQINIDTL KVDRQFVTEL
QTSERSRLVT GAIIDLAKRL SLSVCAEGIE NHEQWDYLRE HGCDNVQGFL FSKPIPLSAL
VRSPCRYDAS AMA
|
|---|
| |