Gene MADE_01437 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMADE_01437 
Symbol 
ID6779146 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAlteromonas macleodii 'Deep ecotype' 
KingdomBacteria 
Replicon accessionNC_011138 
Strand
Start bp1533395 
End bp1534006 
Gene Length612 bp 
Protein Length203 aa 
Translation table11 
GC content43% 
IMG OID642754872 
ProductRNA polymerase sigma factor 
Protein accessionYP_002125742 
Protein GI196156253 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.69658 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTAGTTG GAATTCCTTT GGAACAAAGT AACAGCACAA TCAAACCTAA AGAGTGTGCT 
ACTGAAATGT CTGATTACCT AGTCGCGGTT GCAGATGCTC GATGCAAGCG TTCATTTGCT
CGAGTGTTCA ACTATTTTGC CCCACGTTTG CGCTCTTATG CCCTTAAGCA GATGGGGAAC
GAAGCACTAG CAATGGAGCT TGTACAAGAC ACCATGTCAA ACGTTTGGCA AAAAGCGCAT
TTGTTTAATG CTGAGAAAGG CTCGCCTTCT ACGTGGATTT TCACTATTGC ACGTAACATA
CGGTTTGACA TGTTACGCAA GCTTCAAAAT AGAAAAGAGG ACGTGTGCTC TGACGACCTG
TGGCCTGTGT TATGTGAGCA GACGGCAGAT GTGAATGAGG CGCCACTTGA CGAGCAAGTA
ACTCTAGAGC AAATTGGCTA TATGTTTGAA TCACTTCCGG TTAAACAAAA GGCGGTGGTA
GAAGCTATCT ATATTGATGG CAAATCTCAG CAAGAAGTCG CTGACGAACT TTCTATTCCC
TTAGGTACAG TAAAGTCAAG AACTCGCTTA GCGCTTCAAC GATTAAAGGT CATGTTAAAC
GATAATGATT AG
 
Protein sequence
MLVGIPLEQS NSTIKPKECA TEMSDYLVAV ADARCKRSFA RVFNYFAPRL RSYALKQMGN 
EALAMELVQD TMSNVWQKAH LFNAEKGSPS TWIFTIARNI RFDMLRKLQN RKEDVCSDDL
WPVLCEQTAD VNEAPLDEQV TLEQIGYMFE SLPVKQKAVV EAIYIDGKSQ QEVADELSIP
LGTVKSRTRL ALQRLKVMLN DND