| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_01273 |
|---|
| Symbol | |
|---|
| ID | 6776376 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alteromonas macleodii 'Deep ecotype' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011138 |
|---|
| Strand | - |
|---|
| Start bp | 1365826 |
|---|
| End bp | 1367934 |
|---|
| Gene Length | 2109 bp |
|---|
| Protein Length | 702 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 642754710 |
|---|
| Product | putative two-component sensor histidine kinase and response regulator hybrid |
|---|
| Protein accession | YP_002125581 |
|---|
| Protein GI | 196156092 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAGAGG TTATAAAAAT TCTGTTAGTA GAGGATGATG AAGATGATTA CTTCTTAACC
TCTGATTATC TAGCACAATG TGAGTCACCT TCGTTTGAAC TAACCTGGGT GACTAATAGT
CTAGATGCCG TAGAGGCACT CAAAACTAAC AATTTTGATT TGTGCTTGCT AGATTATTTG
TTGGGTGCTG AAAATGCCAT CGACGTGCTA GGGCTTTTGA AATCTAATCA AATTAGCTTA
CCCGTGGTGA TCCTCACTGG CCAGTCTGAC TCAGCGGTTG ATGAAATGGT TATGCGTGCT
GGTGCTGCAG ACTATCTTCA AAAATCAGAA ATAGAAACGC CTCGTTTTAT GCGTACTATT
CGCTACGCGA TGGTGCGCCG CGATATTGAA AACGAACGCA TTGAACGTAA TAAAGTCGAG
CAGAAGAACA AGGCGAAAGA CAAGTTTCTT GCCCACTTAG GCCACGAACT TCGAACACCG
CTAACCTCCA TTTTAGGGTA CACAGAGCTC CTTATTGATG ACGCGCGCAA CAGCGCTTTT
CAACAGGAGC TATCGATTAT CCACTCAAAC GGAAAACACT TGTTAAGCCT GCTAAATGAT
TTACTTGATA TGTCCCGTAT TATGGCGGAA AAGCTTGAGC TTAATATTCA AGACGTTAAT
TTATCAGCCT TTTTAACCGA TATTCATTCG TTGATGCGGC TTAATGCCAA AGATAAGGGT
CTTAGCCTTA ACGTTGTGTC AAAAACCAAA ATTCCAGAGT TTATCCAAAC CGACCCAACG
CGCCTGCGTC AGGTACTGCT GAACTTAATA TCGAATGCCG TAAAGTTCAC TGATAAAGGA
AGTATAACGT TAACCATCGA ACTAGATGAA TACACGCCTC AGGATGGCTC CCCTCCTCTA
CTCAGGTTTT CCGTTGATGA TACAGGTATT GGCATGGCGC CAGATAAATT GAAAAATATC
TTCCAGCCCT TTGAACAAAT TGAAGATGTT ATGCGTGCCA ATCACGGAGG TGCAGGGTTA
GGGCTTGCAA TCTGTAATGA GTTAGTTTCT AAGTTGGGCG GGGATATTGC GGTTACTTCT
CGACTTGGCG AAGGAAGTAC GTTTACCTTT GATATAAATC CCGGTGAGCT ATCTTCACAA
CCACTGGTTG ACTTACAGCT CGGTCAAATT CAACCGGTGG AGTCGAGCAG CATTGACCTG
TGCGTTACAG GTAGAGTGCT AATTGTAGAT GACCTTAGAG AGATACGCAG ACTAACGGGG
CACCTTGTCA GTCAGTCACA AGCTGACATA AGCTACGCTG AAAATGGCGT AAAAGCGCTG
GAAGCCGTAT TAGAAGCTGA TGAACACAAT CAACCTTTCG ATTTGGTTCT TATGGATATT
CATATGCCCG TAATGAACGG TATTGAAGCC CTCCACGCTA TCCGCCGGCA CGGGCAAGAT
ATTCCTGTTA TTGCTGTCAC CGCCGCGAGC CGTAAAGGCC TGCGGGAGTC GCTAATTCGA
GAAGGGTTTA ACGATGTTAT AGGCAAACCT ATAGACCGCT TTGCATTGGC AAATTTGCTT
TCTCAATATT TGCCTCCAGG CAATTATGTA ACCTTTACTA ATGTAGAGAG TCAAGTCGCT
GATATGCCAA TGGAAAAGCC CTATGCACCG GAAGAAAACA AGACGCCTAA AAGTAACCTC
TATCTAGAGA ACATAGGTGA AACAACAGTG CAAAGCTCGG ACAATAAGCC AAACGATACT
CACCCAGAAA ATGGCGAGGC TGCGCCAAAA CATAAGCGCA TTCTTGTCAT TGAAGACGAC
GAAGACGCAG CTGAATTGCT ACAGCTTTTT CTCACTCATT TAGGCCACGC CGTCACCACA
GAGTATTGTG GGGCTGACGC GTTAAACACA GCAGAAGGTC AGAATTTTGA TCATATCCTG
ATGGATTTAA CCCTGCCTGA CTATAATGGC TACGACCTTG CCGCAGAACT GAAACAGAAA
CTCCCTGATG CCGTACTAAC GATTGTAAGC GGCCACGAAG CAGACACCGA TGCCATGTCA
TCTATTGGCA TAGATAGTGC GCTTTTAAAA CCCGTATCTA AAGACGATTT GGCCTCCGTA
GTAGGTTAA
|
|---|
| Protein sequence | MTEVIKILLV EDDEDDYFLT SDYLAQCESP SFELTWVTNS LDAVEALKTN NFDLCLLDYL
LGAENAIDVL GLLKSNQISL PVVILTGQSD SAVDEMVMRA GAADYLQKSE IETPRFMRTI
RYAMVRRDIE NERIERNKVE QKNKAKDKFL AHLGHELRTP LTSILGYTEL LIDDARNSAF
QQELSIIHSN GKHLLSLLND LLDMSRIMAE KLELNIQDVN LSAFLTDIHS LMRLNAKDKG
LSLNVVSKTK IPEFIQTDPT RLRQVLLNLI SNAVKFTDKG SITLTIELDE YTPQDGSPPL
LRFSVDDTGI GMAPDKLKNI FQPFEQIEDV MRANHGGAGL GLAICNELVS KLGGDIAVTS
RLGEGSTFTF DINPGELSSQ PLVDLQLGQI QPVESSSIDL CVTGRVLIVD DLREIRRLTG
HLVSQSQADI SYAENGVKAL EAVLEADEHN QPFDLVLMDI HMPVMNGIEA LHAIRRHGQD
IPVIAVTAAS RKGLRESLIR EGFNDVIGKP IDRFALANLL SQYLPPGNYV TFTNVESQVA
DMPMEKPYAP EENKTPKSNL YLENIGETTV QSSDNKPNDT HPENGEAAPK HKRILVIEDD
EDAAELLQLF LTHLGHAVTT EYCGADALNT AEGQNFDHIL MDLTLPDYNG YDLAAELKQK
LPDAVLTIVS GHEADTDAMS SIGIDSALLK PVSKDDLASV VG
|
|---|
| |