Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | MADE_01028 |
Symbol | |
ID | 6778983 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Alteromonas macleodii 'Deep ecotype' |
Kingdom | Bacteria |
Replicon accession | NC_011138 |
Strand | + |
Start bp | 1084819 |
End bp | 1088829 |
Gene Length | 4011 bp |
Protein Length | 1336 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 642754460 |
Product | exodeoxyribonuclease V, beta subunit |
Protein accession | YP_002125336 |
Protein GI | 196155847 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
TIGRFAM ID | [TIGR00609] exodeoxyribonuclease V, beta subunit [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCAATA TTACCCCATC CTCTGCAAGC GATATGGCAA CCCAAACCCA GCTTGAAACC AATAAAAAGG CCAACAATGA CGCGCAACTG CTTGATGTGG TAGCAATGCC ATTAAAAGGG CGGCATCTAA TAGAAGCCAG CGCAGGGACG GGTAAAACCT TTAACATTAC CCGGTTATAT TTGCGCTTAC TGTTAGAAAA AAAGCTGACG GTAAAAGAAA TATTGGTAAT GACGTTCACC AAAGCTGCCA CCGAAGAAAT AAAAGGGCGT ATTGCCAAAA CCTTAAGAGA GGCGTTTCTG ATTTGGCAGC AAGCCAAAGA GAATGACAAT CAAATTGACA GCAACTGCGA CCCTGTTTAT CAGCATTTGT TTACTCGCTG TAATACCGAC GAAAGCATGG CTTTGCTAAA AGCTGCACAG TTAGAACTTG ATGAAGCGTC GGTTTTCACT ATTCACGCCT TCTGCCAGCA CGTCATTACC CAATTGGCGT TTAACAGTGG TTTTGCCATG TCGTTAAACT TAGGTAATGA CACTAGCGAT TTGTACCTTC AGGCGGCAGA AGACTACATT CGAAAGGTGA GCAAGAACGA AGACGATTTT AGGCTGTTGG CAGAGTCAGG GTGGCATACA CCTGAAAGGC TGTTACTGGA GTTTAATGCC AGCATTAAAA GTACTCTGAC CCCATTAATG CTTAGCGAGC AGGATATTGA GCTTGCCTAT CAAAGGCAGC TAGATGAATC GCCGCATACT TCTGTGGCCT ACGTAAAAAC GCTATCGCAA AGCGTAGAAG ATAATGAGGG GTTGTTAGTT GAGCAGCTTA TTAAAACACC TGCTCATAAG AAAGAAAGGC CGCAGGAATT GGCCGCATTA AAGAGCTGGC TACGTTCATG CGCAGATAGC GGGCAATATT ACTTACCCCC GCCTGAAGCA GAGGCATTTG TTAAAGGCAC TCGCTACGCG AGAAATTCTT CAGGGGTAAA AGAAATACTA ACGCCGATTA AAGAATTTGC TACTGCATTG AAAAAAGTAT TCGGCGAAAA GGATAAGGCA CTGGCTAAAG TACCCGTGTT TAAGCTGGTT ATAGAAGCCA TTGCGTTCAT TAAAGGGCGC GTTGATAAAC AGAAAAAGCA ACTTGGTGTT ATCGATTTTG ACGATCTTAT TCGCATGTTA GCCGATGAGG TGGTTAAGCC TAACAATACG CTTGTCCCTG AACTTCGTAA AAAATTTCCT GTGGCGCTTA TTGATGAGTT CCAAGATACC GATGCCAAGC AATACGCTAT TTTGGACGCG GTTTATCCCA ATGCATCGAG CAATTCGGCC TCACAAACAG AAACAGATCT TTCAAACGAT AACGAGGAGA GCGCGTCGGC AAGAGTCAGT GCGTTATTAA TGATTGGCGA CCCTAAACAG GCGATATATC GCTTTCGCGG AGGGGATATC TTCACCTACT TGAAAGCGGG CAGACAAGCA GACTATCGCT GGGTAATGAA CACCAACTGG CGCTCGGTAG AGGGGATGGT AAAAGCCTAT AACCGGTTAT TTTATGGTGC ACCTGTGGCA TCAAATACCC CAACTGATGT GTTTGGCTTT GATATCAAAT ACAACCCCGT TGAATTTACG CCCAAAGCGG CAGCGGCTAA AACCCCATTG AGAGACCCTG CAGCGCAGCG TAGCGCGATG AATTACGTGA GCCTGTGCTT GGAAGAGAAA GAAAATACCA ACATTATGCG TCGTAAAATG GCGCAGTGGA TTGCGCAAGA GATTTATCGC CTGCTAAACG AGGCTCAATT TCAATTGGAC AACGGCGAAA CAAAACCGGT AAAGCCGCAA GATATCGCTA TCTTGGTAAA AGACAGGACC GAAGCCGGCG CTATTAAAAA CGTTCTACAG CAAAAAGGGT TAGCCTGCGT TTATTTAAGT GATCGCAGCA ACTTGTTTGC CAGTGCCGAA GCGAAAGATG TCCTCAGGCT TCTTAACGGT ATATGGCATG CGAACGATAC CAGCAACGTT TCCTCTAGCT TAGCATCTCC GCTTTGGGGC TATAGCCCGC AGACCCTCAT TGAACTGCTT TACCACGAAG ATGATGCTAT GTGGGATAAA GCGATGGACA AAGTATTGTC TTTACGCGAC ATGTGGCTTC AAAAAGGCTG TATGAGCGTG CTTTTGCACC TAATGCAAGA CAGCTACGTC CCCCATGCTG ATAACGTGGA GCGCGCGCTT ACAAACTATC AGCATCTTGC CGAAGTGCTG GAAAAAGCCA GTACCACGCA CCAGCGACCC GAACAGCTAC TCGACTGGTT AAATAAACAA ATTCACAAGC CAGAAAGTGA TGAAGAACTT ACGTTACGCC TTGAAAGTGA CAGCCAGCTA ATTCGCCTTA TTACCCAGCA CGGTTCAAAG GGCCTTGAAT ACCCCATCGT GTTTGTTCCT TACGCAACCG GCTATAAGGA TGCATCGAAA AATGGTAAAT CTACGTCACA AATATTTACC TTTTACGATG AAGACAAGCA AGATTTGCAA ATGCAGTTAG GACAGACCGC TCAAGCTATA GCTCGTGTTC AACGCGAAAG CGAAGCAGAA GACATGCGCC TTGCTTATGT TGCGGTGACG CGTGCGGCAC ACCGTTGTTA TATGGGGGTT ATTCCACTGG CTAATAACGA AAAAAGCGCG CTGGCCCGCG CCTTGGGCTT GAGTGGCGAT GAGAGTACGA ACAGAGACTG GCCGAGTGTA TTACGCCGTG TCGCCGAGGA GGATGAGTCT CATGCTAGCT ATATTGACGG CGATGAATTT GAAGAAATCT ATTCAGGTTT TGAACAAGGT GACGCGATAC CTCAACTCAC AGCACTACAA TTTACGGGTA CTGCAAGCGA AGAATGGCGG CTCTATTCAT TTTCAGCCAT GAGCCGTTTA ACTACCGTAG GCTCGGTGAA AAGTACAGAT ACTGTTGAGG GCGCGGGTCA AAGCCTTCCA AGCGTACCTG TACTTCGAAC CGTACGCGAT GAAGAAGTGT ACGCGCTCGA TACGCTTTCC ACTGACGGAG AGATACTTGG TGCTATAGAT GTAGACTCTC ACACCCCGTT GACACAAACG AGCGCAGTAA CGAAAAATGA CTTGCGCTTT ACGCTAGAAA AGGGCGCAAG TGCAGGTAAC TTACTTCACG ATATCTTAGA ACACAGTGAT TTTAGTGCGC CGGTTTGGGA AGAAACTGGC AAAGAGTTAG TGAATCGCTT TGGGTTAGAG GAAAAGCGTA CGCCTTTTCT TTACGAGTGG CTTGAAGAAG TTTTACAAAC GCCTTTGTAC CCCAATGTGC AACTGTGTAT GAGTGACTTG ACGTTAGAGC AAACTCTGCG CGAGGCTGAG TTTTATTTTC CAATGAACGA TACCCAGTGG AAACAGCTTC GAGAAGTGCT TAATACCCAT CGGCAAAGCG TGGCGGAAAC CTTAGGCGGT GAGGCTGAAC CGGCTCCCCA GCTCATTACG GCTAAACTTA AAGGTATGAT GCATGGATTT ATCGATTTAA TTTTTGAACA TGACGGTCAG TTCTTTGTAG CCGATTACAA GTCAACTTGG TTGGGTGATA CCCTTGAAAG CTACATGCCT TCAGCGCTGT TTCACAATAA TCAGCACCAC CTTTATGATC TTCAGTATTT AATATACTGT TTAGCGTTAC ACCGCTATTT AAGCAATACG CTGCCTGATT ATGAACCCGA TATCCACTTT GGCGGCGTTT ATTACCTTTA TTTACGTGGT ATGCACCCAG AGAACGAGCA AGGTGAAGGG GTGTTTTATA CCCATATTCC ATCCAGTTTG CTTCATCAAC TGGACGCTAT TTTCGCAAGT AAAAGCGCTA CGCACACCCC TCCAGACCCG CTAGATAATG GGGAAGAAAA CGAGGCACCG TTAAGTGAAC CAGATTCGGC TGACCCACTT CAAAAAGATA CGAATGCTAA TTCTTCAAGT GAAAGCCAAA AACCTTCGGG TCAGCAGCAA TTTAGTTTCG ACGACGAATA G
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Protein sequence | MSNITPSSAS DMATQTQLET NKKANNDAQL LDVVAMPLKG RHLIEASAGT GKTFNITRLY LRLLLEKKLT VKEILVMTFT KAATEEIKGR IAKTLREAFL IWQQAKENDN QIDSNCDPVY QHLFTRCNTD ESMALLKAAQ LELDEASVFT IHAFCQHVIT QLAFNSGFAM SLNLGNDTSD LYLQAAEDYI RKVSKNEDDF RLLAESGWHT PERLLLEFNA SIKSTLTPLM LSEQDIELAY QRQLDESPHT SVAYVKTLSQ SVEDNEGLLV EQLIKTPAHK KERPQELAAL KSWLRSCADS GQYYLPPPEA EAFVKGTRYA RNSSGVKEIL TPIKEFATAL KKVFGEKDKA LAKVPVFKLV IEAIAFIKGR VDKQKKQLGV IDFDDLIRML ADEVVKPNNT LVPELRKKFP VALIDEFQDT DAKQYAILDA VYPNASSNSA SQTETDLSND NEESASARVS ALLMIGDPKQ AIYRFRGGDI FTYLKAGRQA DYRWVMNTNW RSVEGMVKAY NRLFYGAPVA SNTPTDVFGF DIKYNPVEFT PKAAAAKTPL RDPAAQRSAM NYVSLCLEEK ENTNIMRRKM AQWIAQEIYR LLNEAQFQLD NGETKPVKPQ DIAILVKDRT EAGAIKNVLQ QKGLACVYLS DRSNLFASAE AKDVLRLLNG IWHANDTSNV SSSLASPLWG YSPQTLIELL YHEDDAMWDK AMDKVLSLRD MWLQKGCMSV LLHLMQDSYV PHADNVERAL TNYQHLAEVL EKASTTHQRP EQLLDWLNKQ IHKPESDEEL TLRLESDSQL IRLITQHGSK GLEYPIVFVP YATGYKDASK NGKSTSQIFT FYDEDKQDLQ MQLGQTAQAI ARVQRESEAE DMRLAYVAVT RAAHRCYMGV IPLANNEKSA LARALGLSGD ESTNRDWPSV LRRVAEEDES HASYIDGDEF EEIYSGFEQG DAIPQLTALQ FTGTASEEWR LYSFSAMSRL TTVGSVKSTD TVEGAGQSLP SVPVLRTVRD EEVYALDTLS TDGEILGAID VDSHTPLTQT SAVTKNDLRF TLEKGASAGN LLHDILEHSD FSAPVWEETG KELVNRFGLE EKRTPFLYEW LEEVLQTPLY PNVQLCMSDL TLEQTLREAE FYFPMNDTQW KQLREVLNTH RQSVAETLGG EAEPAPQLIT AKLKGMMHGF IDLIFEHDGQ FFVADYKSTW LGDTLESYMP SALFHNNQHH LYDLQYLIYC LALHRYLSNT LPDYEPDIHF GGVYYLYLRG MHPENEQGEG VFYTHIPSSL LHQLDAIFAS KSATHTPPDP LDNGEENEAP LSEPDSADPL QKDTNANSSS ESQKPSGQQQ FSFDDE
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