| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_00963 |
|---|
| Symbol | |
|---|
| ID | 6775157 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alteromonas macleodii 'Deep ecotype' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011138 |
|---|
| Strand | + |
|---|
| Start bp | 1004240 |
|---|
| End bp | 1005148 |
|---|
| Gene Length | 909 bp |
|---|
| Protein Length | 302 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 642754395 |
|---|
| Product | DNA-directed RNA polymerase alpha subunit |
|---|
| Protein accession | YP_002125271 |
|---|
| Protein GI | 196155782 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit |
|---|
| TIGRFAM ID | [TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0408676 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGAACCAC TAGAGCGCGG CTTTGGCCAT ACTCTAGGTA ACGCCCTACG TCGTATTTTA
CTGTCATCTA TGCCAGGATG TGCAGTTACC GAGGTAGAAA TTGACGGCGT TCTTCACGAG
TACAGCACCA AAGAAGGTGT TCAGGAAGAC GTAATTGAAA TCTTGCTAAA TCTTAAAGGT
TTAGCGGTTC GCCTTGAAGG TAAAACTGAG GCAACCCTAA CTCTAGTGAA ATCTGGCGCT
GGCCCTGTTG TTGCTGGTGA TATTCAGCAT GATGGCGACG TAGAAATTAC AAACCCTGAC
CACGTTATTT GTACTTTAAC TGGCGAAGCT GAAATCAGCA TGCGCATTAA AGTAGAAATG
GGTCGCGGTT ATGTACCAGC TTCTACCCGT CGCTCCTCTG AAGAAGATGA TCGTCCAATT
GGTCGTTTGT TAGTAGACGC TTCATACAGC CCAGTTGAAC GTATTGCTTA CAGTGTAGAG
TCTGCTCGTG TTGAACAACG CACAGACCTA GACAAACTAA TCATCGACAT GGAGACGAAC
GGTACTTTGG ATCCTGAAGA AGCGATCCGC CGTTCTGCTA CTATCCTAGC TGAACAGCTA
GATGCATTCG TAGACCTACG TGATGTGTCT GAGCCAGAAG CGAAAGAAGA GAAGCCAGAA
TTCGATCCGA TTCTGCTTCG TCCAGTAGAT GACCTAGAGC TGACAGTACG TTCTGCAAAC
TGTTTGAAAG CAGAAGCTAT CCAGTACATT GGTGACCTGG TACAGCGCAC TGAGGTTGAG
CTACTTAAAA CGCCAAACCT TGGTAAGAAA TCGCTAACTG AAATCAAAGA TGTTCTAGCA
TCTCGTGGTC TTTCTCTAGG TATGCGCCTA GAAAACTGGC CGCCAGAGAG CATCGCTGAA
AAAGATTAA
|
|---|
| Protein sequence | MEPLERGFGH TLGNALRRIL LSSMPGCAVT EVEIDGVLHE YSTKEGVQED VIEILLNLKG
LAVRLEGKTE ATLTLVKSGA GPVVAGDIQH DGDVEITNPD HVICTLTGEA EISMRIKVEM
GRGYVPASTR RSSEEDDRPI GRLLVDASYS PVERIAYSVE SARVEQRTDL DKLIIDMETN
GTLDPEEAIR RSATILAEQL DAFVDLRDVS EPEAKEEKPE FDPILLRPVD DLELTVRSAN
CLKAEAIQYI GDLVQRTEVE LLKTPNLGKK SLTEIKDVLA SRGLSLGMRL ENWPPESIAE
KD
|
|---|
| |