Gene MADE_00872 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMADE_00872 
Symbol 
ID6777378 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAlteromonas macleodii 'Deep ecotype' 
KingdomBacteria 
Replicon accessionNC_011138 
Strand+ 
Start bp918387 
End bp919307 
Gene Length921 bp 
Protein Length306 aa 
Translation table11 
GC content47% 
IMG OID642754304 
ProductCRISPR-associated protein Cas1 
Protein accessionYP_002125180 
Protein GI196155691 
COG category[L] Replication, recombination and repair 
COG ID[COG1518] Uncharacterized protein predicted to be involved in DNA repair 
TIGRFAM ID[TIGR00287] CRISPR-associated endonuclease Cas1
[TIGR03638] CRISPR-associated endonuclease Cas1, ECOLI subtype 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCATTTA TTCCACTTAA ACCTATTCCT ATTAAAGATC GCAATTCTAT GATTTTCGTT 
GGGATGGGGC GAATCGACGT CAAAGATGGT GCGTTTGTGG TAATCGATGA GGTCAATGGC 
GAGCGCATGC ACATTCCCGT GGGTTCGGTT GTATGCATAA TGCTTGAGCC TGGCACTCGG 
GTATCTCATG CTGCGATAAA ACTGGCAGCG CAAGTTGGTA CTCTGTTAAT TTGGGTCGGT 
GAAGCTGGGG TGAGGCTGTA TGCCGCAGGT CAACCCGGTG GCGCACGGTC AGACAAATTG 
TTGTATCAAG CCAAACTGGC ACTTGATGAG AACTTGCGAT TGAAAGTGGT TCGTAAAATG 
TTTGAGCTAC GATTTGGAGA ACCTGCCCCA GAAAGACGAA GTGTAGATCA ACTGCGCGGT 
ATTGAAGGAG CACGCGTGCG TAAAACCTAT GAACTGCTTG CTAAGCAGTA TAGTGTTGAA 
TGGCGAGGCC GAAAGTACGA CCCCAAAGAT TGGGATAAAG GCGATGTCGT TAATCAATGC 
ATTAGCGCAG CCACGTCTTG TTTATATGGC GTAACCGAAG CAGCAATATT AGCCGCAGGG 
TACGCCCCTG CGATTGGGTT TATTCATTCA GGTAAGCCAT TGTCATTCGT TTATGACATG 
GCTGATATAG TAAAATTCGA ATCCGTAGTA CCAGAAGCAT TCAAAATAGC CTCGAAACGG 
CCTCGCAGTC CTGATAGAGA AGTGCGCGTT GCTTGCCGCA ATATTTTCCG AGAAACCAAA 
CTATTAAACC GCCTTATTCC TTTAATTGAA GACGTCTTGA GTGCTGGAGA GATAACTCCT 
CCTGAGCCCC CTAGGGATAG TCAACCACCG GTTATACCAG AGCCTAAGAA TATCGGAAAC 
GAAGGGCACA GAACGGGATA A
 
Protein sequence
MAFIPLKPIP IKDRNSMIFV GMGRIDVKDG AFVVIDEVNG ERMHIPVGSV VCIMLEPGTR 
VSHAAIKLAA QVGTLLIWVG EAGVRLYAAG QPGGARSDKL LYQAKLALDE NLRLKVVRKM 
FELRFGEPAP ERRSVDQLRG IEGARVRKTY ELLAKQYSVE WRGRKYDPKD WDKGDVVNQC 
ISAATSCLYG VTEAAILAAG YAPAIGFIHS GKPLSFVYDM ADIVKFESVV PEAFKIASKR 
PRSPDREVRV ACRNIFRETK LLNRLIPLIE DVLSAGEITP PEPPRDSQPP VIPEPKNIGN 
EGHRTG