| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_00517 |
|---|
| Symbol | |
|---|
| ID | 6777391 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alteromonas macleodii 'Deep ecotype' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011138 |
|---|
| Strand | + |
|---|
| Start bp | 549425 |
|---|
| End bp | 551116 |
|---|
| Gene Length | 1692 bp |
|---|
| Protein Length | 563 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 642753949 |
|---|
| Product | malate dehydrogenase |
|---|
| Protein accession | YP_002124829 |
|---|
| Protein GI | 196155340 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0281] Malic enzyme |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGAAG ATTCACAGCG ATATCTTTAT ATTCCTCACG CCGGCCCTTC ATTGCTGGAA
ACCCCCCTAC TTAATAAAGG CAGTGCCTTT AACGCTCGCG AGCGGGCTGC GTTCAACCTA
ACAGGGTTAG TTCCACCTCG ATATGAAACC ATAGAAGAGC AGGTGGAACG CGCTTACATG
CAATATAGCA GCTTTGATGA AGCGCTTAAT AAGCACATTT ATTTGCGCGC CATTCAAGAC
AACAACGAAA CGCTGTTTTA CCGCCTCATT CAAAAACATA TCGATGAGAT GATGCCTATC
ATCTATACAC CGACGGTGGG AGATGCCTGT GAGCAGTTTT CTGATATATA CCGCAGTTCA
CGCGGTCTCT TTGTATCTTA TGAAGAGCGT CATCAGCTAG ACGACATTGT ACGAAATGCG
ACTAAACGCA AAGTGAAGGT GATTGTTGTT ACCGACGGTG AGCGTATTTT GGGTCTAGGT
GACCAAGGTA TCGGCGGTAT GGGTATTCCT ATTGGTAAGC TTTCATTGTA CACCGCTTGT
GGGGGTATTA GCCCAGCATA TACCTTACCG GTAATGCTTG ATGTGGGTAC TAACAACGAA
AAGCTCTTGA ACGACCCTAT GTACATGGGG GCCCGCCATC CGCGCATTGG TCAGGAGGAG
TACGATGAGT TCGTAGACAT GTTTATCAAG GCGGTTAAGC GCCGCTGGCC TGATGTCATG
ATCCAGTTTG AAGACTTCGC ACAGCCAAAC GCTATGCCTT TGCTTAATCG CTATCGCAAT
GAAGTGTGTT GCTTTAACGA CGATATTCAA GGTACCGCTG CGGTAACGCT TGGTACCATT
TTAGCGGCCT GTAAAACTAA GCAGCAGAAG CTTAGCGACA TGAAAGTTGT GTTTGTGGGC
GCGGGTTCAG CGGGCTGTGG CATTGCCGAG ATGCTTATAC AGCAAATGGT CTTTGAAGGT
CTAAGTGATG AACAAGCGCG TAAGCAAGTC TTTATGATAG ACCGCTTTGG CTTGGTAACC
GAAGGCATGG AAGGCTTGCG CGACTTTCAA CAAAAGCTTC AGCAGAAGCA AGCCGATTTA
GCTGAGTGGA CATTCAGTGG TGATTACGCA TCGTTACTTG ATGTTATGCA CTGTGCGCAA
CCAGATGTTC TCATTGGTGT TTCAGGACAG CCTGGTTTGT TCACCGAACA AGTTATTCGC
GCCATGAAGC AAGGTTGCGA ATTACCTATT ATCTTCCCGC TGAGTAACCC ATCTCGACAA
GTAGAAGCGC GACCTGAGCA GGTTATCGAG TGGACAGAAG GCGAGGTTAT TATCGCAACA
GGTAGCCCGT TTAAACCTGT TGAGTACAAC GGCAAAGTTA TTCCAATTGC GCAATGTAAC
AACTCCTATA TTTTCCCTGG CATTGGCCTT GGGGTTGTCG CTTCAAAAGC GAAGTTAATA
AGTGATGAAA TGCTAATGGC TGCAAGTAAC GCACTTGCAG CGGCGTCGCC ATTAGTCAAC
ACAGGGTTGG GGTCGCTGCT ACCCCCGCTA GCTGCAATTG CTGAAATAAG CCGTGAGATT
GCTTTTGAAG TGGGAAAGGT GGCGATGGAG CAGGGGCTTG CCTTGGAAAT GTCAGATGAC
GCACTACGCG ACAGCATAGA GCGCAACTTC TGGAAAGCGG AATATCGCCC GTATAAACGC
GTGAGTATTT AA
|
|---|
| Protein sequence | MSEDSQRYLY IPHAGPSLLE TPLLNKGSAF NARERAAFNL TGLVPPRYET IEEQVERAYM
QYSSFDEALN KHIYLRAIQD NNETLFYRLI QKHIDEMMPI IYTPTVGDAC EQFSDIYRSS
RGLFVSYEER HQLDDIVRNA TKRKVKVIVV TDGERILGLG DQGIGGMGIP IGKLSLYTAC
GGISPAYTLP VMLDVGTNNE KLLNDPMYMG ARHPRIGQEE YDEFVDMFIK AVKRRWPDVM
IQFEDFAQPN AMPLLNRYRN EVCCFNDDIQ GTAAVTLGTI LAACKTKQQK LSDMKVVFVG
AGSAGCGIAE MLIQQMVFEG LSDEQARKQV FMIDRFGLVT EGMEGLRDFQ QKLQQKQADL
AEWTFSGDYA SLLDVMHCAQ PDVLIGVSGQ PGLFTEQVIR AMKQGCELPI IFPLSNPSRQ
VEARPEQVIE WTEGEVIIAT GSPFKPVEYN GKVIPIAQCN NSYIFPGIGL GVVASKAKLI
SDEMLMAASN ALAAASPLVN TGLGSLLPPL AAIAEISREI AFEVGKVAME QGLALEMSDD
ALRDSIERNF WKAEYRPYKR VSI
|
|---|
| |