Gene MADE_00446 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMADE_00446 
SymbolrplD 
ID6777874 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAlteromonas macleodii 'Deep ecotype' 
KingdomBacteria 
Replicon accessionNC_011138 
Strand+ 
Start bp471693 
End bp472298 
Gene Length606 bp 
Protein Length201 aa 
Translation table11 
GC content48% 
IMG OID642753878 
Product50S ribosomal protein L4 
Protein accessionYP_002124758 
Protein GI196155269 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0088] Ribosomal protein L4 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones2 
Plasmid unclonability p-value0.000113118 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAATTAA CATTGAAAGA CGCGCAAAGC GCTCTTGAAG TATCCGAAGC GACCTTTGGA 
CGTGAATTCA ACGAAGCCCT GGTACACCAG GTAGTTGTAG CTTACGGAGC AGGCGCTCGT 
CAGGGTACAA AAGCGCAGAA AACTCGCGCT GAAGTTCGTG GTGGCGGTAA GAAGCCATGG 
CGTCAAAAAG GTACTGGCCG TGCACGTGCT GGTACTATCC GTAGCCCAAT TTGGGTTGGC 
GGTGGCCGTG CTTTCGCAGC AAAGCCTCGT GACTTCGACC AAAAAGTTAA CAAGAAAATG 
TATCGCGGTG CGATCAAGAG CATCTTGTCT GAACTAATCC GTCAAGACCG TTTGGTTGTT 
GTAGAGAAGT TCGGTGTTGA CGCACCTAAG ACTAAAGCTC TTATTTCTGC ACTTAACGAA 
TATGAACTAA ATGACGTTCT AATCGTTACT CCTGAAGTTG ATGAGAACTT GTTCCTAGCG 
GCGCGCAACT TGTACAAAGT TGACGTACGT GACGTAGCAG GCATCGACCC AGTGAGCTTG 
ATTGCATTTG AGAAAGTGCT AATGACTGCT GATGCGGTTA AACAACTTGA GGAGGCGTTA 
GCATGA
 
Protein sequence
MELTLKDAQS ALEVSEATFG REFNEALVHQ VVVAYGAGAR QGTKAQKTRA EVRGGGKKPW 
RQKGTGRARA GTIRSPIWVG GGRAFAAKPR DFDQKVNKKM YRGAIKSILS ELIRQDRLVV 
VEKFGVDAPK TKALISALNE YELNDVLIVT PEVDENLFLA ARNLYKVDVR DVAGIDPVSL 
IAFEKVLMTA DAVKQLEEAL A